Literature DB >> 31763769

Basics of Expansion Microscopy.

Aleksandra Klimas1, Brendan Gallagher1, Yongxin Zhao1.   

Abstract

Optical imaging techniques are often used in neuroscience to understand brain function and discern disease pathogenesis. However, the optical diffraction limit precludes conventional optical imaging approaches from resolving nanoscopic structures with feature sizes smaller than 300 nm. Expansion microscopy (ExM) circumvents this limit by physically expanding preserved tissues embedded in a swellable hydrogel. Biomolecules of interest are covalently linked to a polymer matrix, which is then isotropically expanded at least 100-fold in size in pure water after mechanical homogenization of the tissue-gel. The sample can then be investigated with nanoscale precision using a conventional diffraction-limited microscope. The protocol described here is a variant of ExM that uses regents and equipment found in a typical biology laboratory and has been optimized for imaging proteins in expanded brain tissues.
© 2019 by John Wiley & Sons, Inc. Basic Protocol: Expansion microscopy for intact brain tissue. © 2019 John Wiley & Sons, Inc.

Entities:  

Keywords:  expansion microscopy; fluorescence microscopy; immunohistochemistry; nanoscale imaging; super-resolution imaging

Mesh:

Substances:

Year:  2019        PMID: 31763769      PMCID: PMC6880804          DOI: 10.1002/cpcy.67

Source DB:  PubMed          Journal:  Curr Protoc Cytom        ISSN: 1934-9297


  20 in total

1.  Surpassing the lateral resolution limit by a factor of two using structured illumination microscopy.

Authors:  M G Gustafsson
Journal:  J Microsc       Date:  2000-05       Impact factor: 1.758

2.  Breaking the diffraction resolution limit by stimulated emission: stimulated-emission-depletion fluorescence microscopy.

Authors:  S W Hell; J Wichmann
Journal:  Opt Lett       Date:  1994-06-01       Impact factor: 3.776

3.  Fluorescence Microscopy: A Concise Guide to Current Imaging Methods.

Authors:  Christian A Combs; Hari Shroff
Journal:  Curr Protoc Neurosci       Date:  2017-04-10

Review 4.  Expansion microscopy: principles and uses in biological research.

Authors:  Asmamaw T Wassie; Yongxin Zhao; Edward S Boyden
Journal:  Nat Methods       Date:  2018-12-20       Impact factor: 28.547

5.  Nanoscale imaging of clinical specimens using pathology-optimized expansion microscopy.

Authors:  Yongxin Zhao; Octavian Bucur; Humayun Irshad; Fei Chen; Astrid Weins; Andreea L Stancu; Eun-Young Oh; Marcello DiStasio; Vanda Torous; Benjamin Glass; Isaac E Stillman; Stuart J Schnitt; Andrew H Beck; Edward S Boyden
Journal:  Nat Biotechnol       Date:  2017-07-17       Impact factor: 54.908

6.  X10 expansion microscopy enables 25-nm resolution on conventional microscopes.

Authors:  Sven Truckenbrodt; Manuel Maidorn; Dagmar Crzan; Hanna Wildhagen; Selda Kabatas; Silvio O Rizzoli
Journal:  EMBO Rep       Date:  2018-07-09       Impact factor: 8.807

7.  Nanoscale imaging of RNA with expansion microscopy.

Authors:  Fei Chen; Asmamaw T Wassie; Allison J Cote; Anubhav Sinha; Shahar Alon; Shoh Asano; Evan R Daugharthy; Jae-Byum Chang; Adam Marblestone; George M Church; Arjun Raj; Edward S Boyden
Journal:  Nat Methods       Date:  2016-07-04       Impact factor: 28.547

8.  Protein-retention expansion microscopy of cells and tissues labeled using standard fluorescent proteins and antibodies.

Authors:  Paul W Tillberg; Fei Chen; Kiryl D Piatkevich; Yongxin Zhao; Chih-Chieh Jay Yu; Brian P English; Linyi Gao; Anthony Martorell; Ho-Jun Suk; Fumiaki Yoshida; Ellen M DeGennaro; Douglas H Roossien; Guanyu Gong; Uthpala Seneviratne; Steven R Tannenbaum; Robert Desimone; Dawen Cai; Edward S Boyden
Journal:  Nat Biotechnol       Date:  2016-07-04       Impact factor: 54.908

9.  Multiplexed and scalable super-resolution imaging of three-dimensional protein localization in size-adjustable tissues.

Authors:  Taeyun Ku; Justin Swaney; Jeong-Yoon Park; Alexandre Albanese; Evan Murray; Jae Hun Cho; Young-Gyun Park; Vamsi Mangena; Jiapei Chen; Kwanghun Chung
Journal:  Nat Biotechnol       Date:  2016-07-25       Impact factor: 54.908

10.  Multiplexed imaging of high-density libraries of RNAs with MERFISH and expansion microscopy.

Authors:  Guiping Wang; Jeffrey R Moffitt; Xiaowei Zhuang
Journal:  Sci Rep       Date:  2018-03-19       Impact factor: 4.379

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  1 in total

Review 1.  Expansion microscopy: A powerful nanoscale imaging tool for neuroscientists.

Authors:  Brendan R Gallagher; Yongxin Zhao
Journal:  Neurobiol Dis       Date:  2021-04-02       Impact factor: 5.996

  1 in total

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