Literature DB >> 31758393

Construction of a multicopy genomic DNA library and its application for suppression analysis.

Hongbaek Cho1.   

Abstract

Suppression analysis is used for the identification of new genes and genetic interactions when there is a notable phenotype available for genetic selection or screening. A random genomic DNA library constructed on a multi-copy plasmid is a useful tool for suppression analysis when one expects that an overdose of a few genes will suppress the phenotype. These libraries have been successfully used to determine the function of a gene by revealing genes whose functions are related to the gene of interest. They have also been used to identify the targets of chemical or biological agents by increasing the number of unaffected target gene products in a cell. In this article, I will discuss important considerations for constructing multicopy genomic DNA libraries. The protocol provided in this paper should be a useful guide for constructing genomic DNA libraries in many bacterial species for which multi-copy plasmids are available.

Entities:  

Keywords:  genetic selection; genomic DNA; library construction; multicopy plasmid; suppression analysis

Mesh:

Substances:

Year:  2019        PMID: 31758393     DOI: 10.1007/s12275-019-9417-8

Source DB:  PubMed          Journal:  J Microbiol        ISSN: 1225-8873            Impact factor:   3.422


  16 in total

1.  Multicopy suppression: an approach to understanding intracellular functioning of the protein export system.

Authors:  C Ueguchi; K Ito
Journal:  J Bacteriol       Date:  1992-03       Impact factor: 3.490

Review 2.  Recent advances in large-scale transposon mutagenesis.

Authors:  L Hamer; T M DeZwaan; M V Montenegro-Chamorro; S A Frank; J E Hamer
Journal:  Curr Opin Chem Biol       Date:  2001-02       Impact factor: 8.822

3.  A collection of strains containing genetically linked alternating antibiotic resistance elements for genetic mapping of Escherichia coli.

Authors:  M Singer; T A Baker; G Schnitzler; S M Deischel; M Goel; W Dove; K J Jaacks; A D Grossman; J W Erickson; C A Gross
Journal:  Microbiol Rev       Date:  1989-03

4.  Sequence analysis of Tn10 insertion sites in a collection of Escherichia coli strains used for genetic mapping and strain construction.

Authors:  B P Nichols; O Shafiq; V Meiners
Journal:  J Bacteriol       Date:  1998-12       Impact factor: 3.490

5.  Multicopy plasmid suppression of stationary phase chaperone toxicity in Escherichia coli by phosphogluconate dehydratase and the N-terminus of DnaK.

Authors:  D Rockabrand; P Blum
Journal:  Mol Gen Genet       Date:  1995-12-15

6.  HrpA, a DEAH-box RNA helicase, is involved in mRNA processing of a fimbrial operon in Escherichia coli.

Authors:  Jovanka T Koo; Juno Choe; Steve L Moseley
Journal:  Mol Microbiol       Date:  2004-06       Impact factor: 3.501

7.  A viral protein antibiotic inhibits lipid II flippase activity.

Authors:  Karthik R Chamakura; Lok-To Sham; Rebecca M Davis; Lorna Min; Hongbaek Cho; Natividad Ruiz; Thomas G Bernhardt; Ry Young
Journal:  Nat Microbiol       Date:  2017-09-11       Impact factor: 17.745

8.  Identification of MltG as a potential terminase for peptidoglycan polymerization in bacteria.

Authors:  Rachel Yunck; Hongbaek Cho; Thomas G Bernhardt
Journal:  Mol Microbiol       Date:  2015-11-19       Impact factor: 3.501

9.  The mecillinam resistome reveals a role for peptidoglycan endopeptidases in stimulating cell wall synthesis in Escherichia coli.

Authors:  Ghee Chuan Lai; Hongbaek Cho; Thomas G Bernhardt
Journal:  PLoS Genet       Date:  2017-07-27       Impact factor: 5.917

10.  Whole genome re-sequencing to identify suppressor mutations of mutant and foreign Escherichia coli FtsZ.

Authors:  Kiani A J Arkus Gardner; Masaki Osawa; Harold P Erickson
Journal:  PLoS One       Date:  2017-04-26       Impact factor: 3.240

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