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Correction to: Semi-parametric estimates of population accuracy and bias of predictions of breeding values and future phenotypes using the LR method.

Andres Legarra1, Antonio Reverter2.   

Abstract

After publication of original article [1], the authors noticed that there was an error.

Entities:  

Year:  2019        PMID: 31757207      PMCID: PMC6874819          DOI: 10.1186/s12711-019-0511-5

Source DB:  PubMed          Journal:  Genet Sel Evol        ISSN: 0999-193X            Impact factor:   4.297


Correction to: Genet Sel Evol (2018) 50:53 10.1186/s12711-018-0426-6

After publication of original article [1], the authors noticed that there was an error. In the section “Quadratic forms of estimated breeding values” we wrote, based on Taylor series approximations, that: This statement is wrong, because a further expansion of the Taylor series (until its 3rd term) shows that the expectation of both and is 1. The correct paragraph should be: Moreover, the Abstract reads “Contrary to common belief, the regression of true on estimated breeding values is (on expectation) lower than 1 for small or related validation sets, due to family structures.” whereas it should read “Up to the second term of a Taylor series expansion, the regression of true on estimated breeding values is (on expectation) equal to 1, even for small or related validation sets.” “In the remainder of this paper, we assume that the expectation of a ratio of quadratic forms is equal to the ratio of the expectations. The “Appendix” shows that this holds when the number of individuals included in the statistics is large (several hundred or more) or when they are not structured into very large sibships. Otherwise, as shown in the “Appendix”, both the true regression coefficient  and its estimator have an expectation less than 1, even when the model is perfect and the EBV have the right dispersion.” “In the remainder of this paper, we assume that the expectation of a ratio of quadratic forms is equal to the ratio of the expectations. The “Correction” below shows that this holds (up to the second order of the Taylor series expansion) when the BLUP properties hold, as assumed throughout the paper.” Further proof (equivalent to the Appendix) is below. According to [2] the second-order Taylor series expansion of a ratio is . Consider the bias in the estimation of the ratio using the estimator . In our case: Therefore, we expand for where and The expression for the covariance of bilinear forms (under normality) is: ( is the covariance matrix across ; chapter 2 Equation 58 in [3]). Applied to our case, this yields: The terms linked to the means disappear, as before, because they have the form , which has a value of 0. Then, we have: which are all the elements needed. To simplify notation, consider . Putting all together gives: which cancels out. Therefore, up to the 3rd order approximation, the bias in the estimation of using the estimator is 0. In addition, this shows that the expected value of is also 1 since the same derivation as above holds with in the place of .
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1.  Semi-parametric estimates of population accuracy and bias of predictions of breeding values and future phenotypes using the LR method.

Authors:  Andres Legarra; Antonio Reverter
Journal:  Genet Sel Evol       Date:  2018-11-06       Impact factor: 4.297

  1 in total
  1 in total

1.  Predictive performances of animal models using different multibreed relationship matrices in systems with rotational crossbreeding.

Authors:  Bjarke Grove Poulsen; Tage Ostersen; Bjarne Nielsen; Ole Fredslund Christensen
Journal:  Genet Sel Evol       Date:  2022-04-06       Impact factor: 4.297

  1 in total

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