Literature DB >> 31754261

The molecular principles governing the activity and functional diversity of AAA+ proteins.

Cristina Puchades1, Colby R Sandate1, Gabriel C Lander2.   

Abstract

ATPases associated with diverse cellular activities (AAA+ proteins) are macromolecular machines that convert the chemical energy contained in ATP molecules into powerful mechanical forces to remodel a vast array of cellular substrates, including protein aggregates, macromolecular complexes and polymers. AAA+ proteins have key functionalities encompassing unfolding and disassembly of such substrates in different subcellular localizations and, hence, power a plethora of fundamental cellular processes, including protein quality control, cytoskeleton remodelling and membrane dynamics. Over the past 35 years, many of the key elements required for AAA+ activity have been identified through genetic, biochemical and structural analyses. However, how ATP powers substrate remodelling and whether a shared mechanism underlies the functional diversity of the AAA+ superfamily were uncertain. Advances in cryo-electron microscopy have enabled high-resolution structure determination of AAA+ proteins trapped in the act of processing substrates, revealing a conserved core mechanism of action. It has also become apparent that this common mechanistic principle is structurally adjusted to carry out a diverse array of biological functions. Here, we review how substrate-bound structures of AAA+ proteins have expanded our understanding of ATP-driven protein remodelling.

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Year:  2019        PMID: 31754261      PMCID: PMC9402527          DOI: 10.1038/s41580-019-0183-6

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   113.915


  119 in total

1.  ATP-dependent proteases degrade their substrates by processively unraveling them from the degradation signal.

Authors:  C Lee; M P Schwartz; S Prakash; M Iwakura; A Matouschek
Journal:  Mol Cell       Date:  2001-03       Impact factor: 17.970

2.  Molecular architecture of the 26S proteasome holocomplex determined by an integrative approach.

Authors:  Keren Lasker; Friedrich Förster; Stefan Bohn; Thomas Walzthoeni; Elizabeth Villa; Pia Unverdorben; Florian Beck; Ruedi Aebersold; Andrej Sali; Wolfgang Baumeister
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-23       Impact factor: 11.205

3.  Mechanism of DNA translocation in a replicative hexameric helicase.

Authors:  Eric J Enemark; Leemor Joshua-Tor
Journal:  Nature       Date:  2006-07-20       Impact factor: 49.962

4.  Structure and activity of the N-terminal substrate recognition domains in proteasomal ATPases.

Authors:  Sergej Djuranovic; Marcus D Hartmann; Michael Habeck; Astrid Ursinus; Peter Zwickl; Jörg Martin; Andrei N Lupas; Kornelius Zeth
Journal:  Mol Cell       Date:  2009-05-28       Impact factor: 17.970

5.  Unfolding the mechanism of the AAA+ unfoldase VAT by a combined cryo-EM, solution NMR study.

Authors:  Rui Huang; Zev A Ripstein; Rafal Augustyniak; Michal Lazniewski; Krzysztof Ginalski; Lewis E Kay; John L Rubinstein
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-11       Impact factor: 11.205

6.  PAS1, a yeast gene required for peroxisome biogenesis, encodes a member of a novel family of putative ATPases.

Authors:  R Erdmann; F F Wiebel; A Flessau; J Rytka; A Beyer; K U Fröhlich; W H Kunau
Journal:  Cell       Date:  1991-02-08       Impact factor: 41.582

7.  Structures of the ATP-fueled ClpXP proteolytic machine bound to protein substrate.

Authors:  Xue Fei; Tristan A Bell; Simon Jenni; Benjamin M Stinson; Tania A Baker; Stephen C Harrison; Robert T Sauer
Journal:  Elife       Date:  2020-02-28       Impact factor: 8.140

8.  Cdc48/p97 promotes degradation of aberrant nascent polypeptides bound to the ribosome.

Authors:  Rati Verma; Robert S Oania; Natalie J Kolawa; Raymond J Deshaies
Journal:  Elife       Date:  2013-01-22       Impact factor: 8.140

9.  Conformational switching of the 26S proteasome enables substrate degradation.

Authors:  Mary E Matyskiela; Gabriel C Lander; Andreas Martin
Journal:  Nat Struct Mol Biol       Date:  2013-06-16       Impact factor: 15.369

Review 10.  The life cycle of the 26S proteasome: from birth, through regulation and function, and onto its death.

Authors:  Ido Livneh; Victoria Cohen-Kaplan; Chen Cohen-Rosenzweig; Noa Avni; Aaron Ciechanover
Journal:  Cell Res       Date:  2016-07-22       Impact factor: 25.617

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  49 in total

1.  Simulating the directional translocation of a substrate by the AAA+ motor in the 26S proteasome.

Authors:  Arjun Saha; Arieh Warshel
Journal:  Proc Natl Acad Sci U S A       Date:  2021-06-08       Impact factor: 11.205

2.  Rubisco activase requires residues in the large subunit N terminus to remodel inhibited plant Rubisco.

Authors:  Jediael Ng; Zhijun Guo; Oliver Mueller-Cajar
Journal:  J Biol Chem       Date:  2020-09-18       Impact factor: 5.157

3.  Structure of the human clamp loader reveals an autoinhibited conformation of a substrate-bound AAA+ switch.

Authors:  Christl Gaubitz; Xingchen Liu; Joseph Magrino; Nicholas P Stone; Jacob Landeck; Mark Hedglin; Brian A Kelch
Journal:  Proc Natl Acad Sci U S A       Date:  2020-09-09       Impact factor: 11.205

Review 4.  Type VII secretion systems: structure, functions and transport models.

Authors:  Angel Rivera-Calzada; Nikolaos Famelis; Oscar Llorca; Sebastian Geibel
Journal:  Nat Rev Microbiol       Date:  2021-05-26       Impact factor: 60.633

5.  A chemical genetics approach to examine the functions of AAA proteins.

Authors:  Tommaso Cupido; Natalie H Jones; Michael J Grasso; Rudolf Pisa; Tarun M Kapoor
Journal:  Nat Struct Mol Biol       Date:  2021-03-29       Impact factor: 15.369

6.  Structures of the human LONP1 protease reveal regulatory steps involved in protease activation.

Authors:  Mia Shin; Edmond R Watson; Albert S Song; Jeffrey T Mindrebo; Scott J Novick; Patrick R Griffin; R Luke Wiseman; Gabriel C Lander
Journal:  Nat Commun       Date:  2021-05-28       Impact factor: 14.919

7.  Structural basis for inhibition of the AAA-ATPase Drg1 by diazaborine.

Authors:  Michael Prattes; Irina Grishkovskaya; Victor-Valentin Hodirnau; Ingrid Rössler; Isabella Klein; Christina Hetzmannseder; Gertrude Zisser; Christian C Gruber; Karl Gruber; David Haselbach; Helmut Bergler
Journal:  Nat Commun       Date:  2021-06-09       Impact factor: 14.919

8.  An empirical energy landscape reveals mechanism of proteasome in polypeptide translocation.

Authors:  Rui Fang; Jason Hon; Mengying Zhou; Ying Lu
Journal:  Elife       Date:  2022-01-20       Impact factor: 8.140

Review 9.  Getting there: understanding the chromosomal recruitment of the AAA+ ATPase Pch2/TRIP13 during meiosis.

Authors:  Richard Cardoso da Silva; Gerben Vader
Journal:  Curr Genet       Date:  2021-03-12       Impact factor: 3.886

10.  Atomistic basis of force generation, translocation, and coordination in a viral genome packaging motor.

Authors:  Joshua Pajak; Erik Dill; Emilio Reyes-Aldrete; Mark A White; Brian A Kelch; Paul J Jardine; Gaurav Arya; Marc C Morais
Journal:  Nucleic Acids Res       Date:  2021-06-21       Impact factor: 16.971

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