Literature DB >> 31752575

The La-related proteins: structures and interactions of a versatile superfamily of RNA-binding proteins.

Anne-Catherine Dock-Bregeon1, Karen A Lewis2, Maria R Conte3.   

Abstract

The La-related proteins (LaRPs) are an ancient superfamily of RNA-binding proteins orchestrating the major fates of RNA, from processing and maturation to regulation of mRNA translation. LaRPs are instrumental in modulating complex assemblies where the RNA is bound, folded, processed, escorted and presented to the functional effectors often through recruitment of protein partners. This intricate web of protein-RNA and protein-protein interactions is enabled by the modular nature of the LaRPs, comprising several structured domains connected by flexible linkers, and other sequences lacking recognizable folded motifs. Recent structures, together with biochemical and biophysical studies, have provided insights into how each LaRP family has evolved unique mechanisms of RNA recognition, not only through the conserved RNA-binding unit, the La-module, but also mediated by other family-specific motifs. Furthermore, in a series of unexpected twists and turns, they have revealed that the dynamic and conformational interplay of multi-structured domains and disordered regions operate in unison to achieve RNA substrate discrimination. This review proposes a perspective of our current knowledge of the structure-function relationship of the LaRP superfamily.

Entities:  

Keywords:  La-module; La-related proteins; LaRP; RNA biology; RNA-binding proteins; RRM; structure-function relationship

Mesh:

Substances:

Year:  2019        PMID: 31752575      PMCID: PMC7928045          DOI: 10.1080/15476286.2019.1695712

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  74 in total

Review 1.  Winged helix proteins.

Authors:  K S Gajiwala; S K Burley
Journal:  Curr Opin Struct Biol       Date:  2000-02       Impact factor: 6.809

Review 2.  La protein and its associated small nuclear and nucleolar precursor RNAs.

Authors:  Richard J Maraia; Robert V Intine
Journal:  Gene Expr       Date:  2002

3.  Structural analysis of cooperative RNA binding by the La motif and central RRM domain of human La protein.

Authors:  Caterina Alfano; Domenico Sanfelice; Jeff Babon; Geoff Kelly; Amanda Jacks; Stephen Curry; Maria R Conte
Journal:  Nat Struct Mol Biol       Date:  2004-03-07       Impact factor: 15.369

4.  NMR assignment of the N-terminal region of human La free and in complex with RNA.

Authors:  Domenico Sanfelice; Geoff Kelly; Stephen Curry; Maria R Conte
Journal:  Biomol NMR Assign       Date:  2008-06-05       Impact factor: 0.746

5.  An intrinsically disordered C terminus allows the La protein to assist the biogenesis of diverse noncoding RNA precursors.

Authors:  Nathan J Kucera; Michael E Hodsdon; Sandra L Wolin
Journal:  Proc Natl Acad Sci U S A       Date:  2011-01-06       Impact factor: 11.205

6.  hLARP7 C-terminal domain contains an xRRM that binds the 3' hairpin of 7SK RNA.

Authors:  Catherine D Eichhorn; Rahul Chug; Juli Feigon
Journal:  Nucleic Acids Res       Date:  2016-09-26       Impact factor: 16.971

7.  Sjogren syndrome antigen B (SSB)/La promotes global microRNA expression by binding microRNA precursors through stem-loop recognition.

Authors:  Chunyang Liang; Ke Xiong; Keith E Szulwach; Yi Zhang; Zhaohui Wang; Junmin Peng; Mingui Fu; Peng Jin; Hiroshi I Suzuki; Qinghua Liu
Journal:  J Biol Chem       Date:  2012-11-05       Impact factor: 5.157

8.  Systematic analysis of the protein interaction network for the human transcription machinery reveals the identity of the 7SK capping enzyme.

Authors:  Célia Jeronimo; Diane Forget; Annie Bouchard; Qintong Li; Gordon Chua; Christian Poitras; Cynthia Thérien; Dominique Bergeron; Sylvie Bourassa; Jack Greenblatt; Benoit Chabot; Guy G Poirier; Timothy R Hughes; Mathieu Blanchette; David H Price; Benoit Coulombe
Journal:  Mol Cell       Date:  2007-07-20       Impact factor: 17.970

9.  A La-related protein modulates 7SK snRNP integrity to suppress P-TEFb-dependent transcriptional elongation and tumorigenesis.

Authors:  Nanhai He; Nadine S Jahchan; Eunmee Hong; Qiang Li; Mark A Bayfield; Richard J Maraia; Kunxin Luo; Qiang Zhou
Journal:  Mol Cell       Date:  2008-01-31       Impact factor: 17.970

10.  LARP1 functions as a molecular switch for mTORC1-mediated translation of an essential class of mRNAs.

Authors:  Sungki Hong; Mallory A Freeberg; Ting Han; Avani Kamath; Yao Yao; Tomoko Fukuda; Tsukasa Suzuki; John K Kim; Ken Inoki
Journal:  Elife       Date:  2017-06-26       Impact factor: 8.140

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  8 in total

1.  Stabilize and connect: the role of LARP7 in nuclear non-coding RNA metabolism.

Authors:  Daniele Hasler; Gunter Meister; Utz Fischer
Journal:  RNA Biol       Date:  2020-06-03       Impact factor: 4.652

2.  Role of the RNA-binding protein La in cancer pathobiology.

Authors:  Gunhild Sommer; Tilman Heise
Journal:  RNA Biol       Date:  2020-07-20       Impact factor: 4.652

Review 3.  LARP1 and LARP4: up close with PABP for mRNA 3' poly(A) protection and stabilization.

Authors:  Sandy Mattijssen; Guennadi Kozlov; Bruno D Fonseca; Kalle Gehring; Richard J Maraia
Journal:  RNA Biol       Date:  2021-01-31       Impact factor: 4.652

4.  RNA-Binding Protein La Mediates TGFβ-Induced Epithelial to Mesenchymal Transition and Cancer Stem Cell Properties.

Authors:  Tilman Heise; Gunhild Sommer
Journal:  Cancers (Basel)       Date:  2021-01-19       Impact factor: 6.639

Review 5.  Protein-Based Hydrogels: Promising Materials for Tissue Engineering.

Authors:  Niyousha Davari; Negar Bakhtiary; Mehran Khajehmohammadi; Soulmaz Sarkari; Hamidreza Tolabi; Farnaz Ghorbani; Behafarid Ghalandari
Journal:  Polymers (Basel)       Date:  2022-02-28       Impact factor: 4.329

6.  Structural basis of 3'-end poly(A) RNA recognition by LARP1.

Authors:  Guennadi Kozlov; Sandy Mattijssen; Jianning Jiang; Samuel Nyandwi; Tara Sprules; James R Iben; Steven L Coon; Sergei Gaidamakov; Anne M Noronha; Christopher J Wilds; Richard J Maraia; Kalle Gehring
Journal:  Nucleic Acids Res       Date:  2022-08-18       Impact factor: 19.160

7.  Crystal Structure of a Variant PAM2 Motif of LARP4B Bound to the MLLE Domain of PABPC1.

Authors:  Clemens Grimm; Jann-Patrick Pelz; Cornelius Schneider; Katrin Schäffler; Utz Fischer
Journal:  Biomolecules       Date:  2020-06-06

8.  Structural dynamics in the La-module of La-related proteins.

Authors:  Javier Lizarrondo; Anne-Catherine Dock-Bregeon; Luigi Martino; Maria R Conte
Journal:  RNA Biol       Date:  2020-03-18       Impact factor: 4.652

  8 in total

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