Literature DB >> 31751889

Recent insights into the structure of TFIID, its assembly, and its binding to core promoter.

Avinash B Patel1, Basil J Greber2, Eva Nogales3.   

Abstract

TFIID is a large multiprotein assembly that serves as a general transcription factor for transcription initiation by eukaryotic RNA polymerase II (Pol II). TFIID is involved in the recognition of the core promoter sequences and neighboring chromatin marks, and can interact with gene-specific activators and repressors. In order to obtain a better molecular and mechanistic understanding of the function of TFIID, its structure has been pursued for many years. However, the scarcity of TFIID and its highly flexible nature have made this pursuit very challenging. Recent breakthroughs, largely due to methodological advances in cryo-electron microscopy, have finally described the structure of this complex, both alone and engaged with core promoter DNA, revealing the functional significance of its conformational complexity in the process of core promoter recognition and initiation of Pol II transcription. Here, we review these recent structural insights and discuss their implications for our understanding of eukaryotic transcription initiation.
Copyright © 2019 The Authors. Published by Elsevier Ltd.. All rights reserved.

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Year:  2019        PMID: 31751889      PMCID: PMC7156316          DOI: 10.1016/j.sbi.2019.10.001

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  35 in total

1.  Structure and function of a human TAFII250 double bromodomain module.

Authors:  R H Jacobson; A G Ladurner; D S King; R Tjian
Journal:  Science       Date:  2000-05-26       Impact factor: 47.728

Review 2.  Contacts in context: promoter specificity and macromolecular interactions in transcription.

Authors:  J A Goodrich; G Cutler; R Tjian
Journal:  Cell       Date:  1996-03-22       Impact factor: 41.582

3.  A histone octamer-like structure within TFIID.

Authors:  A Hoffmann; C M Chiang; T Oelgeschläger; X Xie; S K Burley; Y Nakatani; R G Roeder
Journal:  Nature       Date:  1996-03-28       Impact factor: 49.962

4.  The architecture of human general transcription factor TFIID core complex.

Authors:  Christoph Bieniossek; Gabor Papai; Christiane Schaffitzel; Frederic Garzoni; Maxime Chaillet; Elisabeth Scheer; Petros Papadopoulos; Laszlo Tora; Patrick Schultz; Imre Berger
Journal:  Nature       Date:  2013-01-06       Impact factor: 49.962

5.  Mapping the initiator binding Taf2 subunit in the structure of hydrated yeast TFIID.

Authors:  Gabor Papai; Manish K Tripathi; Christine Ruhlmann; Sebastiaan Werten; Corinne Crucifix; P Anthony Weil; Patrick Schultz
Journal:  Structure       Date:  2009-03-11       Impact factor: 5.006

Review 6.  Cryo-EM in the study of challenging systems: the human transcription pre-initiation complex.

Authors:  Eva Nogales; Robert K Louder; Yuan He
Journal:  Curr Opin Struct Biol       Date:  2016-09-30       Impact factor: 6.809

7.  Cytoplasmic TAF2-TAF8-TAF10 complex provides evidence for nuclear holo-TFIID assembly from preformed submodules.

Authors:  Simon Trowitzsch; Cristina Viola; Elisabeth Scheer; Sascha Conic; Virginie Chavant; Marjorie Fournier; Gabor Papai; Ima-Obong Ebong; Christiane Schaffitzel; Juan Zou; Matthias Haffke; Juri Rappsilber; Carol V Robinson; Patrick Schultz; Laszlo Tora; Imre Berger
Journal:  Nat Commun       Date:  2015-01-14       Impact factor: 14.919

8.  Molecular structure of promoter-bound yeast TFIID.

Authors:  Olga Kolesnikova; Adam Ben-Shem; Jie Luo; Jeff Ranish; Patrick Schultz; Gabor Papai
Journal:  Nat Commun       Date:  2018-11-07       Impact factor: 14.919

9.  Co-translational assembly of mammalian nuclear multisubunit complexes.

Authors:  Ivanka Kamenova; Pooja Mukherjee; Sascha Conic; Florian Mueller; Farrah El-Saafin; Paul Bardot; Jean-Marie Garnier; Doulaye Dembele; Simona Capponi; H T Marc Timmers; Stéphane D Vincent; László Tora
Journal:  Nat Commun       Date:  2019-04-15       Impact factor: 14.919

10.  Zinc knuckle of TAF1 is a DNA binding module critical for TFIID promoter occupancy.

Authors:  Elizabeth C Curran; Hui Wang; Thomas R Hinds; Ning Zheng; Edith H Wang
Journal:  Sci Rep       Date:  2018-03-15       Impact factor: 4.379

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  17 in total

1.  Piggybacking on Classical Import and Other Non-Classical Mechanisms of Nuclear Import Appear Highly Prevalent within the Human Proteome.

Authors:  Tanner M Tessier; Katelyn M MacNeil; Joe S Mymryk
Journal:  Biology (Basel)       Date:  2020-07-23

2.  Loss of TAF8 causes TFIID dysfunction and p53-mediated apoptotic neuronal cell death.

Authors:  Farrah El-Saafin; Maria I Bergamasco; Yunshun Chen; Rose E May; Prabagaran Esakky; Soroor Hediyeh-Zadeh; Mathew Dixon; Stephen Wilcox; Melissa J Davis; Andreas Strasser; Gordon K Smyth; Tim Thomas; Anne K Voss
Journal:  Cell Death Differ       Date:  2022-03-31       Impact factor: 12.067

3.  BET family members Bdf1/2 modulate global transcription initiation and elongation in Saccharomyces cerevisiae.

Authors:  Rafal Donczew; Steven Hahn
Journal:  Elife       Date:  2021-06-17       Impact factor: 8.140

4.  Structures and implications of TBP-nucleosome complexes.

Authors:  Haibo Wang; Le Xiong; Patrick Cramer
Journal:  Proc Natl Acad Sci U S A       Date:  2021-07-27       Impact factor: 11.205

Review 5.  Regulation of RNA Polymerase II Transcription Initiation and Elongation by Transcription Factor TFII-I.

Authors:  Niko Linzer; Alexis Trumbull; Rukiye Nar; Matthew D Gibbons; David T Yu; John Strouboulis; Jörg Bungert
Journal:  Front Mol Biosci       Date:  2021-05-13

6.  Human Microfibrillar-Associated Protein 4 (MFAP4) Gene Promoter: A TATA-Less Promoter That Is Regulated by Retinol and Coenzyme Q10 in Human Fibroblast Cells.

Authors:  Ying-Ju Lin; An-Ni Chen; Xi Jiang Yin; Chunxiang Li; Chih-Chien Lin
Journal:  Int J Mol Sci       Date:  2020-11-09       Impact factor: 5.923

Review 7.  The SAGA chromatin-modifying complex: the sum of its parts is greater than the whole.

Authors:  Jelly H M Soffers; Jerry L Workman
Journal:  Genes Dev       Date:  2020-10-01       Impact factor: 11.361

8.  On the NF-Y regulome as in ENCODE (2019).

Authors:  Mirko Ronzio; Andrea Bernardini; Giulio Pavesi; Roberto Mantovani; Diletta Dolfini
Journal:  PLoS Comput Biol       Date:  2020-12-28       Impact factor: 4.475

Review 9.  Regulation of Eukaryotic RNAPs Activities by Phosphorylation.

Authors:  Araceli González-Jiménez; Adrián Campos; Francisco Navarro; Andrés Clemente-Blanco; Olga Calvo
Journal:  Front Mol Biosci       Date:  2021-06-25

10.  Universal promoter scanning by Pol II during transcription initiation in Saccharomyces cerevisiae.

Authors:  Chenxi Qiu; Huiyan Jin; Irina Vvedenskaya; Jordi Abante Llenas; Tingting Zhao; Indranil Malik; Alex M Visbisky; Scott L Schwartz; Ping Cui; Pavel Čabart; Kang Hoo Han; William K M Lai; Richard P Metz; Charles D Johnson; Sing-Hoi Sze; B Franklin Pugh; Bryce E Nickels; Craig D Kaplan
Journal:  Genome Biol       Date:  2020-06-02       Impact factor: 13.583

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