Literature DB >> 31750610

Synergy Between Expert and Machine-Learning Approaches Allows for Improved Retrosynthetic Planning.

Tomasz Badowski1, Ewa P Gajewska1, Karol Molga1, Bartosz A Grzybowski1,2.   

Abstract

When computers plan multistep syntheses, they can rely either on expert knowledge or information machine-extracted from large reaction repositories. Both approaches suffer from imperfect functions evaluating reaction choices: expert functions are heuristics based on chemical intuition, whereas machine learning (ML) relies on neural networks (NNs) that can make meaningful predictions only about popular reaction types. This paper shows that expert and ML approaches can be synergistic-specifically, when NNs are trained on literature data matched onto high-quality, expert-coded reaction rules, they achieve higher synthetic accuracy than either of the methods alone and, importantly, can also handle rare/specialized reaction types.
© 2020 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Keywords:  artificial intelligence; computer-aided retrosynthesis; expert systems; neural networks

Year:  2019        PMID: 31750610     DOI: 10.1002/anie.201912083

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  12 in total

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2.  Deep learning and generative methods in cheminformatics and chemical biology: navigating small molecule space intelligently.

Authors:  Douglas B Kell; Soumitra Samanta; Neil Swainston
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3.  Influence of Template Size, Canonicalization, and Exclusivity for Retrosynthesis and Reaction Prediction Applications.

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Journal:  J Chem Inf Model       Date:  2021-12-23       Impact factor: 4.956

4.  Reinforcing the supply chain of umifenovir and other antiviral drugs with retrosynthetic software.

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Journal:  Nat Commun       Date:  2021-12-16       Impact factor: 14.919

5.  AI-Driven Synthetic Route Design Incorporated with Retrosynthesis Knowledge.

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6.  Research progress of pathway and genome evolution in microbes.

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7.  Machine Learning May Sometimes Simply Capture Literature Popularity Trends: A Case Study of Heterocyclic Suzuki-Miyaura Coupling.

Authors:  Wiktor Beker; Rafał Roszak; Agnieszka Wołos; Nicholas H Angello; Vandana Rathore; Martin D Burke; Bartosz A Grzybowski
Journal:  J Am Chem Soc       Date:  2022-03-08       Impact factor: 15.419

8.  Evaluating and clustering retrosynthesis pathways with learned strategy.

Authors:  Yiming Mo; Yanfei Guan; Pritha Verma; Jiang Guo; Mike E Fortunato; Zhaohong Lu; Connor W Coley; Klavs F Jensen
Journal:  Chem Sci       Date:  2020-11-23       Impact factor: 9.825

Review 9.  Schistosomiasis Drug Discovery in the Era of Automation and Artificial Intelligence.

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Journal:  Front Immunol       Date:  2021-05-31       Impact factor: 7.561

10.  Current and Future Roles of Artificial Intelligence in Medicinal Chemistry Synthesis.

Authors:  Thomas J Struble; Juan C Alvarez; Scott P Brown; Milan Chytil; Justin Cisar; Renee L DesJarlais; Ola Engkvist; Scott A Frank; Daniel R Greve; Daniel J Griffin; Xinjun Hou; Jeffrey W Johannes; Constantine Kreatsoulas; Brian Lahue; Miriam Mathea; Georg Mogk; Christos A Nicolaou; Andrew D Palmer; Daniel J Price; Richard I Robinson; Sebastian Salentin; Li Xing; Tommi Jaakkola; William H Green; Regina Barzilay; Connor W Coley; Klavs F Jensen
Journal:  J Med Chem       Date:  2020-04-14       Impact factor: 7.446

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