Literature DB >> 31750518

Combining clinical and molecular data in regression prediction models: insights from a simulation study.

Riccardo De Bin1, Anne-Laure Boulesteix2, Axel Benner3, Natalia Becker3, Willi Sauerbrei4.   

Abstract

Data integration, i.e. the use of different sources of information for data analysis, is becoming one of the most important topics in modern statistics. Especially in, but not limited to, biomedical applications, a relevant issue is the combination of low-dimensional (e.g. clinical data) and high-dimensional (e.g. molecular data such as gene expressions) data sources in a prediction model. Not only the different characteristics of the data, but also the complex correlation structure within and between the two data sources, pose challenging issues. In this paper, we investigate these issues via simulations, providing some useful insight into strategies to combine low- and high-dimensional data in a regression prediction model. In particular, we focus on the effect of the correlation structure on the results, while accounting for the influence of our specific choices in the design of the simulation study.
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Keywords:  data integration; prediction models; regularized regression

Year:  2020        PMID: 31750518     DOI: 10.1093/bib/bbz136

Source DB:  PubMed          Journal:  Brief Bioinform        ISSN: 1467-5463            Impact factor:   11.622


  5 in total

1.  Investigating treatment-effect modification by a continuous covariate in IPD meta-analysis: an approach using fractional polynomials.

Authors:  Willi Sauerbrei; Patrick Royston
Journal:  BMC Med Res Methodol       Date:  2022-04-06       Impact factor: 4.615

2.  Introduction to statistical simulations in health research.

Authors:  Anne-Laure Boulesteix; Rolf Hh Groenwold; Michal Abrahamowicz; Harald Binder; Matthias Briel; Roman Hornung; Tim P Morris; Jörg Rahnenführer; Willi Sauerbrei
Journal:  BMJ Open       Date:  2020-12-13       Impact factor: 2.692

3.  Ten quick tips for biomarker discovery and validation analyses using machine learning.

Authors:  Ramon Diaz-Uriarte; Elisa Gómez de Lope; Rosalba Giugno; Holger Fröhlich; Petr V Nazarov; Isabel A Nepomuceno-Chamorro; Armin Rauschenberger; Enrico Glaab
Journal:  PLoS Comput Biol       Date:  2022-08-11       Impact factor: 4.779

4.  Prognosis of lasso-like penalized Cox models with tumor profiling improves prediction over clinical data alone and benefits from bi-dimensional pre-screening.

Authors:  Florent Chatelain; Laurent Guyon; Rémy Jardillier; Dzenis Koca
Journal:  BMC Cancer       Date:  2022-10-05       Impact factor: 4.638

5.  Single-center versus multi-center data sets for molecular prognostic modeling: a simulation study.

Authors:  Daniel Samaga; Roman Hornung; Herbert Braselmann; Julia Hess; Horst Zitzelsberger; Claus Belka; Anne-Laure Boulesteix; Kristian Unger
Journal:  Radiat Oncol       Date:  2020-05-14       Impact factor: 3.481

  5 in total

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