| Literature DB >> 31749831 |
Hongxue Meng1, Xuejie Guo2, Dawei Sun3, Yuebin Liang2, Jidong Lang2, Yingmin Han2, Qingqing Lu2, Yanxiang Zhang2, Yanxin An2, Geng Tian2, Dawei Yuan2, Shidong Xu3, Jingshu Geng1.
Abstract
Worldwide, especially in China, lung cancer accounts to a major cause of mortality related to cancer. Treatment decisions mainly depend on oncogenic driver mutations, which offer novel therapeutic targets for anticancer therapy. However, studies of genomic profiling of driver gene mutations in mainland China are rare. Hence, this is an extensive study of these mutations in Non-small-cell lung cancer (NSCLC) Chinese patients. Comparison of driver gene mutations of lung adenocarcinoma with other races showed that the mutational frequencies were similar within the different East Asian populations, while there were differences between East Asian and non-Asian populations. Further, four promising candidates for druggable mutations of epidermal growth factor receptor (EGFR) were revealed that open up avenues to develop and design personal therapeutic approaches for patients harboring mutations. These results will help to develop personalized therapy targeting NSCLC.Entities:
Keywords: EGFR; driver mutations; epidemiology; lung cancer; personalized medicine
Year: 2019 PMID: 31749831 PMCID: PMC6842958 DOI: 10.3389/fgene.2019.01008
Source DB: PubMed Journal: Front Genet ISSN: 1664-8021 Impact factor: 4.599
Frequency of mutations in lung adenocarcinoma histologic subtypes.
| Gene | Alteration | Frequency in NSCLC | Total frequency in NSCLC |
|---|---|---|---|
| Rearrangement | 2.8% | 2.8% | |
| V600E | 1.3% | 1.6% | |
| Exon19del | 20.6% | 55.9% | |
| G719A/C/S | 2.4% | ||
| L858R | 28.1% | ||
| L861Q | 1.1% | ||
| T790M | 2.1% | ||
| S768I | 1.1% | ||
| Exon 20ins | 2.1% | 2.1% | |
| G12C/R/S/A/D/V | 9.4% | 11.7% | |
| G13C/R/S/A/D/V | 1.1% | ||
| Q61K/L/R/H | 1.0% | ||
| Amplification | 1.1% | 1.3% | |
| E542K | 0.7% | 2.9% | |
| E545K/Q | 1.4% | ||
| H1047L/R | 0.8% | ||
| G12C/R/S/A/D/V | 0.3% | 0.7% | |
| G13C/R/S/A/D/V | 0.1% | ||
| Q61K/L/R/H | 0.3% | ||
| Rearrangement | 0.6% | 0.6% | |
| Rearrangement | 0.6% | 0.6% |
Figure 1(A), The mutation sites and frequency of EGFR and (B) KRAS in 3,423 patients with lung adenocarcinoma.
Figure 2Four-set venn-diagram of single and multiple mutation panoramagram for lung adenocarcinoma tissue samples.
Comparison of driver gene mutations of lung adenocarcinoma between mainland China (this study), Hong Kong (Diehl et al., 2008), Japan (Madic et al., 2012), Black, and White (George et al., 2015).
| Mainland China | Hong Kong | Japan (411) | Black | White | ||
|---|---|---|---|---|---|---|
| Mutant | Mutant | Mutant | Mutant | Mutant | ||
| Rearrangement | 2.8% | 6.0% | 5.0% | 0.7% | 0% | |
| V600E | 1.3% | 1.3% | 0.7% | 0.7% | 1.2% | |
| Exon19del | 20.6% | 22.8% | – | 6.8% | 6.0% | |
| L858R | 28.1% | 16.8% | –a | 3.4% | 4.2% | |
| Total | 55.9% | 43.0% | 35.0% | 11.6% | 14.4% | |
| Exon 20ins | 2.1% | 0.7% | 1.7% | 1.4% | 0.6% | |
| G12/G13/Q61 | 11.7% | 11.4% | 8.5% | 34.2% | 33.5% | |
| Amplification | 1.1% | 1.3% | 2.2% | 2.1% | 2.4% | |
| E542K/E545K/Q | 2.9% | 0.7% | 2.7% | 2% | 2% | |
| G12/G13/Q61 | 0.7% | 0.7% | 0.5% | 0% | 1.2% | |
| Rearrangement | 0.6% | – | 1.1% | 0% | 1.2% | |
| Rearrangement | 0.6% | 2.0% | 0.5% | 0.7% | 0% |
The mutation frequency was not mentioned in the related study.
Frequency of mutations in lung adenocarcinoma blood samples.
| Gene | Alteration | Frequency in NSCLC | Total frequency in NSCLC |
|---|---|---|---|
| V600E | 1.0% | 1.4% | |
| Exon 19del | 10.8% | 32.6% | |
| G719A/C/S | 1.4% | ||
| L858R | 13.1% | ||
| L861Q | 0.9% | ||
| T790M | 5.1% | ||
| S768I | 0.7% | ||
| Exon 20ins | 0.9% | 0.9% | |
| G12C/R/S/A/D/V | 5.9% | 11.2% | |
| G13C/R/S/A/D/V | 1.4% | ||
| Q61K/L/R/H | 1.6% | ||
| Amplification | 0.5% | 0.7% | |
| E542K | 0.8% | 2.9% | |
| E545K/Q | 1.2% | ||
| H1047L/R | 0.9% | ||
| G12C/R/S/A/D/V | 0.2% | 1.0% | |
| G13C/R/S/A/D/V | 0.3% | ||
| Q61K/L/R/H | 0.5% |
Frequency of mutations in lung squamous cell carcinoma samples.
| Gene | Alteration | Frequency in SCC tissues | Total frequency in SCC tissues | Frequency in SCC blood | Total frequency in SCC blood |
|---|---|---|---|---|---|
| V600E | 0.7% (1/134) | 0.7% | 1.0% (1/96) | 1.0% | |
| Exon 19del | 1.5% (2/134) | 5.2% | 2.1%(2/96) | 8.3% | |
| L858R | 3.7% (5/134) | 6.3% (6/96) | |||
| K117N | 0.7% (1/134) | 4.5% | / | 7.3% | |
| G12C/D/V | 3.0% (4/134) | 3.1% (3/96) | |||
| Q61H | / | 1.0% (1/96) | |||
| A146T/P | 0.7% (1/134) | 3.1% (3/96) | |||
| Amplification | 0.7% (1/134) | 0.7% | / | / | |
| E542K | 2.2% (3/134) | 9.0% | 1.0% (1/96) | 6.3% | |
| E545Q/K | 6.0% (8/134) | 5.2% (5/96) | |||
| H1047R | 0.7% (1/134) | / |
Several new EGFR druggable mutations were discovered by Hotspot3D in patients with lung adenocarcinoma.
| Gene | Related drugs | Alterations | |
|---|---|---|---|
| erlotinib; gefitinib; lapatinib | p.V742I | c.G2224A | |
| erlotinib; gefitinib; lapatinib | p.I789M | c.C2367G | |
| erlotinib; gefitinib; lapatinib | p.N842H | c.A2524C | |
| afatinib | p.S811C | c.C2432G | |
Figure 3Three-dimensionional (3D) models of (A) the EGFRQ. kinase domain-Gefitinib complex structure (PDB: 2ITY), (B) the EGFR kinase domain-Afatinib complex structure (PDB: 4G5J). Gefitinib and Afatinib are shown as sticks. Residues at the mutation site of the EGFR kinase domains (V742, I789, N842 and S811) are shown with arrows.