Literature DB >> 31746912

Predicting in situ nanoparticle behavior using multiple particle tracking and artificial neural networks.

Chad Curtis1, Mike McKenna, Hugo Pontes, Dorsa Toghani, Alex Choe, Elizabeth Nance.   

Abstract

Predictive models of nanoparticle transport can drive design of nanotherapeutic platforms to overcome biological barriers and achieve localized delivery. In this paper, we demonstrate the ability of artificial neural networks to predict both nanoparticle properties, such as size and protein adsorption, and aspects of the brain microenvironment, such as cell internalization, viscosity, and brain region by using large (>100 000) trajectory datasets collected via multiple particle tracking in in vitro gel models of the brain and cultured organotypic brain slices. Our neural network achieved a 0.75 recall score when predicting gel viscosity based on trajectory datasets, compared to 0.49 using an obstruction scaling model. When predicting in situ nanoparticle size based on trajectory datasets, neural networks achieved a 0.90 recall score compared to 0.83 using an optimized Stokes-Einstein predictor. To distinguish between nanoparticles of different sizes in more complex nanoparticle mixtures, our neural network achieved up to a recall score of 0.85. Even in cases of more nuanced output variables where mathematical models are not available, such as protein adhesion, neural networks retained the ability to distinguish between particle populations (recall score of 0.89). These findings demonstrate how trajectory datasets in combination with machine learning techniques can be used to characterize the particle-microenvironment interaction space.

Entities:  

Year:  2019        PMID: 31746912      PMCID: PMC7202937          DOI: 10.1039/c9nr06327g

Source DB:  PubMed          Journal:  Nanoscale        ISSN: 2040-3364            Impact factor:   7.790


  28 in total

1.  Effects of the presence or absence of a protein corona on silica nanoparticle uptake and impact on cells.

Authors:  Anna Lesniak; Federico Fenaroli; Marco P Monopoli; Christoffer Åberg; Kenneth A Dawson; Anna Salvati
Journal:  ACS Nano       Date:  2012-06-29       Impact factor: 15.881

2.  The influence of protein adsorption on nanoparticle association with cultured endothelial cells.

Authors:  Morton S Ehrenberg; Alan E Friedman; Jacob N Finkelstein; Günter Oberdörster; James L McGrath
Journal:  Biomaterials       Date:  2008-11-13       Impact factor: 12.479

3.  TrackMate: An open and extensible platform for single-particle tracking.

Authors:  Jean-Yves Tinevez; Nick Perry; Johannes Schindelin; Genevieve M Hoopes; Gregory D Reynolds; Emmanuel Laplantine; Sebastian Y Bednarek; Spencer L Shorte; Kevin W Eliceiri
Journal:  Methods       Date:  2016-10-03       Impact factor: 3.608

4.  Analysis of locomotor behavior in the German Mouse Clinic.

Authors:  Annemarie Zimprich; Manuela A Östereicher; Lore Becker; Petra Dirscherl; Luise Ernst; Helmut Fuchs; Valerie Gailus-Durner; Lillian Garrett; Florian Giesert; Lisa Glasl; Angelika Hummel; Jan Rozman; Martin Hrabě de Angelis; Daniela Vogt-Weisenhorn; Wolfgang Wurst; Sabine M Hölter
Journal:  J Neurosci Methods       Date:  2017-05-05       Impact factor: 2.390

Review 5.  Nanoparticle PEGylation for imaging and therapy.

Authors:  Jesse V Jokerst; Tatsiana Lobovkina; Richard N Zare; Sanjiv S Gambhir
Journal:  Nanomedicine (Lond)       Date:  2011-06       Impact factor: 5.307

Review 6.  Factors affecting the clearance and biodistribution of polymeric nanoparticles.

Authors:  Frank Alexis; Eric Pridgen; Linda K Molnar; Omid C Farokhzad
Journal:  Mol Pharm       Date:  2008-08-04       Impact factor: 4.939

7.  Real-time intracellular transport of gene nanocarriers studied by multiple particle tracking.

Authors:  Junghae Suh; Denis Wirtz; Justin Hanes
Journal:  Biotechnol Prog       Date:  2004 Mar-Apr

8.  Stimuli-responsive clustered nanoparticles for improved tumor penetration and therapeutic efficacy.

Authors:  Hong-Jun Li; Jin-Zhi Du; Xiao-Jiao Du; Cong-Fei Xu; Chun-Yang Sun; Hong-Xia Wang; Zhi-Ting Cao; Xian-Zhu Yang; Yan-Hua Zhu; Shuming Nie; Jun Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-28       Impact factor: 11.205

Review 9.  Nanoparticle therapeutics: an emerging treatment modality for cancer.

Authors:  Mark E Davis; Zhuo Georgia Chen; Dong M Shin
Journal:  Nat Rev Drug Discov       Date:  2008-09       Impact factor: 84.694

10.  Surface chemistry governs cellular tropism of nanoparticles in the brain.

Authors:  Eric Song; Alice Gaudin; Amanda R King; Young-Eun Seo; Hee-Won Suh; Yang Deng; Jiajia Cui; Gregory T Tietjen; Anita Huttner; W Mark Saltzman
Journal:  Nat Commun       Date:  2017-05-19       Impact factor: 14.919

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  5 in total

1.  Governing Transport Principles for Nanotherapeutic Application in the Brain.

Authors:  Hawley Helmbrecht; Andrea Joseph; Michael McKenna; Mengying Zhang; Elizabeth Nance
Journal:  Curr Opin Chem Eng       Date:  2020-10-18       Impact factor: 5.163

Review 2.  Passive and Active Microrheology for Biomedical Systems.

Authors:  Yating Mao; Paige Nielsen; Jamel Ali
Journal:  Front Bioeng Biotechnol       Date:  2022-07-05

Review 3.  Merging data curation and machine learning to improve nanomedicines.

Authors:  Chen Chen; Zvi Yaari; Elana Apfelbaum; Piotr Grodzinski; Yosi Shamay; Daniel A Heller
Journal:  Adv Drug Deliv Rev       Date:  2022-02-18       Impact factor: 17.873

4.  Organotypic whole hemisphere brain slice models to study the effects of donor age and oxygen-glucose-deprivation on the extracellular properties of cortical and striatal tissue.

Authors:  Michael McKenna; Jeremy R Filteau; Brendan Butler; Kenneth Sluis; Michael Chungyoun; Nels Schimek; Elizabeth Nance
Journal:  J Biol Eng       Date:  2022-06-13       Impact factor: 6.248

5.  Engineering the pH-Sensitivity of the Graphene and Carbon Nanotube Based Nanomedicines in Smart Cancer Therapy by Grafting Trimetyl Chitosan.

Authors:  Azadeh Khoshoei; Ebrahim Ghasemy; Fatemeh Poustchi; Mohammad-Ali Shahbazi; Reza Maleki
Journal:  Pharm Res       Date:  2020-08-03       Impact factor: 4.200

  5 in total

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