Literature DB >> 31745746

Evolution of MIR159/319 genes in Brassica campestris and their function in pollen development.

Ziwei Hu1, Xiuping Shen1, Xun Xiang1,2,3, Jiashu Cao4,5,6.   

Abstract

KEY MESSAGE: MIR159/319 have conserved evolution and diversified function after WGT in Brassica campestris, both of them can lead pollen vitality and germination abnormality, Bra-MIR319c also can function in flower development. MiR159 and miR319 are extensively studied highly conserved microRNAs which play roles in vegetative development, reproduction, and hormone regulation. In this study, the effects of whole-genome triplication (WGT) on the evolution of the MIR159/319 family and the functional diversification of the genes were comprehensively investigated in Brassica campestris. We identified 11 MIR159/319 genes in B. campestris, which produced five mature sequences. After analyzing the precursor sequences and phylogenetic tree, we found that Bra-MIR159/319 have evolutionary conservatism. Furthermore, Bra-MIR159/319 show functional diversification after WGT, as indicated by their expression patterns and the cis-element in their promoter. GUS signal showed that Bra-MIR159a and Bra-MIR319c can be expressed in anther but in different development stages. In B. campestris, overexpressed MIR159a and MIR319c contribute to late anther development and promote pollen abortion. Moreover, Bra-MIR319c can partially assume the function of MIR319a in flower development.

Entities:  

Keywords:  Bra-MIR159/319; Brassica campestris; Evolution; Functional diversification; Pollen development; WGT

Mesh:

Substances:

Year:  2019        PMID: 31745746     DOI: 10.1007/s11103-019-00920-z

Source DB:  PubMed          Journal:  Plant Mol Biol        ISSN: 0167-4412            Impact factor:   4.076


  44 in total

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Authors:  Xionglei He; Jianzhi Zhang
Journal:  Curr Biol       Date:  2005-06-07       Impact factor: 10.834

2.  The fate of duplicated genes in a polyploid plant genome.

Authors:  Anne Roulin; Paul L Auer; Marc Libault; Jessica Schlueter; Andrew Farmer; Greg May; Gary Stacey; Rebecca W Doerge; Scott A Jackson
Journal:  Plant J       Date:  2012-10-22       Impact factor: 6.417

Review 3.  MicroRNA activity in the Arabidopsis male germline.

Authors:  Filipe Borges; Patrícia A Pereira; R Keith Slotkin; Robert A Martienssen; Jörg D Becker
Journal:  J Exp Bot       Date:  2011-03       Impact factor: 6.992

4.  Collinearity between a 30-centimorgan segment of Arabidopsis thaliana chromosome 4 and duplicated regions within the Brassica napus genome.

Authors:  A C Cavell; D J Lydiate; I A Parkin; C Dean; M Trick
Journal:  Genome       Date:  1998-02       Impact factor: 2.166

5.  Comparative analysis of the MIR319a microRNA locus in Arabidopsis and related Brassicaceae.

Authors:  Norman Warthmann; Sandip Das; Christa Lanz; Detlef Weigel
Journal:  Mol Biol Evol       Date:  2008-02-22       Impact factor: 16.240

6.  Genetic analysis reveals functional redundancy and the major target genes of the Arabidopsis miR159 family.

Authors:  Robert S Allen; Junyan Li; Melissa I Stahle; Aurélie Dubroué; Frank Gubler; Anthony A Millar
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-04       Impact factor: 11.205

7.  A loop-to-base processing mechanism underlies the biogenesis of plant microRNAs miR319 and miR159.

Authors:  Nicolás G Bologna; Julieta L Mateos; Edgardo G Bresso; Javier F Palatnik
Journal:  EMBO J       Date:  2009-10-08       Impact factor: 11.598

8.  Evolution of Arabidopsis microRNA families through duplication events.

Authors:  Christopher Maher; Lincoln Stein; Doreen Ware
Journal:  Genome Res       Date:  2006-03-06       Impact factor: 9.043

9.  Phylogenetic analysis reveals conservation and diversification of micro RNA166 genes among diverse plant species.

Authors:  Suvakanta Barik; Shabari SarkarDas; Archita Singh; Vibhav Gautam; Pramod Kumar; Manoj Majee; Ananda K Sarkar
Journal:  Genomics       Date:  2013-11-22       Impact factor: 5.736

10.  Impacts of Whole-Genome Triplication on MIRNA Evolution in Brassica rapa.

Authors:  Chao Sun; Jian Wu; Jianli Liang; James C Schnable; Wencai Yang; Feng Cheng; Xiaowu Wang
Journal:  Genome Biol Evol       Date:  2015-11-01       Impact factor: 3.416

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  5 in total

1.  Sequence and functional analysis of MIR319 promoter homologs from Brassica juncea reveals regulatory diversification and altered expression under stress.

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2.  Complex Molecular Evolution and Expression of Expansin Gene Families in Three Basic Diploid Species of Brassica.

Authors:  Weimiao Liu; Tianqi Lyu; Liai Xu; Ziwei Hu; Xingpeng Xiong; Tingting Liu; Jiashu Cao
Journal:  Int J Mol Sci       Date:  2020-05-12       Impact factor: 5.923

3.  Functional Similarity and Difference among Bra-MIR319 Family in Plant Development.

Authors:  Ziwei Hu; Tingting Liu; Jiashu Cao
Journal:  Genes (Basel)       Date:  2019-11-21       Impact factor: 4.096

4.  Identification of miRNAs and their target genes in genic male sterility lines in Brassica napus by small RNA sequencing.

Authors:  Jianxia Jiang; Pengfei Xu; Yajie Li; Yanli Li; Xirong Zhou; Meiyan Jiang; Junying Zhang; Jifeng Zhu; Weirong Wang; Liyong Yang
Journal:  BMC Plant Biol       Date:  2021-11-09       Impact factor: 4.215

Review 5.  The Control of Developmental Phase Transitions by microRNAs and Their Targets in Seed Plants.

Authors:  Jingyi Ma; Pan Zhao; Shibiao Liu; Qi Yang; Huihong Guo
Journal:  Int J Mol Sci       Date:  2020-03-13       Impact factor: 5.923

  5 in total

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