Literature DB >> 31743035

Detergent-Free Simultaneous Sample Preparation Method for Proteomics and Metabolomics.

Alexandre Zougman1, John P Wilson2, Lee D Roberts3, Rosamonde E Banks1.   

Abstract

The integration of omics techniques has seen a step change in our understanding of biological systems. However, multiomics has been impaired by mutually exclusive omic separation methods and the destructive nature of the techniques when sample is limited. We describe Simultaneous Trapping (SiTrap), a simple and effective detergent-free method that facilitates direct measurement of the proteome and metabolome in the same sample extract. This "single-pot" multiomics processing is particularly beneficial in cases when sample amounts are limited or are heterogeneous, for example, tissue biopsies. We demonstrate the value of the SiTrap methodology as an essential multiomics tool in a proof-of-principle integrated study of renal cancer tissue biopsy samples. We believe SiTrap has the potential to become an indispensable tool in translational medical research.

Entities:  

Keywords:  SiTrap; detergent-free sample preparation; multiomics sample preparation

Mesh:

Substances:

Year:  2019        PMID: 31743035     DOI: 10.1021/acs.jproteome.9b00662

Source DB:  PubMed          Journal:  J Proteome Res        ISSN: 1535-3893            Impact factor:   4.466


  3 in total

1.  ProMetIS, deep phenotyping of mouse models by combined proteomics and metabolomics analysis.

Authors:  Alyssa Imbert; Magali Rompais; Mohammed Selloum; Florence Castelli; Emmanuelle Mouton-Barbosa; Marion Brandolini-Bunlon; Emeline Chu-Van; Charlotte Joly; Aurélie Hirschler; Pierrick Roger; Thomas Burger; Sophie Leblanc; Tania Sorg; Sadia Ouzia; Yves Vandenbrouck; Claudine Médigue; Christophe Junot; Myriam Ferro; Estelle Pujos-Guillot; Anne Gonzalez de Peredo; François Fenaille; Christine Carapito; Yann Herault; Etienne A Thévenot
Journal:  Sci Data       Date:  2021-12-03       Impact factor: 6.444

2.  Recurrent Topics in Mass Spectrometry-Based Metabolomics and Lipidomics-Standardization, Coverage, and Throughput.

Authors:  Evelyn Rampler; Yasin El Abiead; Harald Schoeny; Mate Rusz; Felina Hildebrand; Veronika Fitz; Gunda Koellensperger
Journal:  Anal Chem       Date:  2020-11-28       Impact factor: 6.986

Review 3.  A Pragmatic Guide to Enrichment Strategies for Mass Spectrometry-Based Glycoproteomics.

Authors:  Nicholas M Riley; Carolyn R Bertozzi; Sharon J Pitteri
Journal:  Mol Cell Proteomics       Date:  2020-12-20       Impact factor: 5.911

  3 in total

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