| Literature DB >> 31736900 |
Chenchen Zhao1,2, Hui Zhao1, Shuai Zhang1,3, Junyu Luo1,3, Xiangzhen Zhu1, Li Wang1, Peng Zhao1,2, Hongxia Hua2, Jinjie Cui1,3.
Abstract
Chrysoperla sinica (Tjeder) is widely recognized as an important holometabolous natural enemy of various insect pests in different cropping systems and as a non-target surrogate in environmental risk assessment of Bt rice (i.e., genetically modified rice to express a toxin gene from Bacillus thuringiensis). Like other complex organisms, abundant microbes live inside C. sinica; however, to date, microbiome composition and diversity of the whole life cycle in C. sinica has not yet been well characterized. In the current study, we analyze the composition and biodiversity of microbiota across the whole life cycle of C. sinica by using high-throughput Illumina sequencing of the 16S ribosomal RNA gene. Collectively, Proteobacteria and Firmicutes dominated the microenvironment at all stages, but their relative abundances fluctuated by host developmental stage. Interestingly, eggs, neonates, and adults shared similar microbes, including an abundance of Rickettsia and Wolbachia. After larva feeding, Staphylococcus, Enterobacteriaceae, and Serratia were enriched in larvae and pupa, suggesting that food may serve as a major factor contributing to altered microbial community divergence at different developmental stages. Our findings demonstrated that C. sinica harbor a variety of bacteria, and that dynamic changes in community composition and relative abundances of members of its microbiome occur during different life cycle stages. Evaluating the role of these bacterial symbionts in this natural enemy may assist in developing environmental risk assessments and novel biological control strategies.Entities:
Keywords: Chrysoperla sinica; bacterial diversity; development stage; high-throughput sequencing; microbiotas
Year: 2019 PMID: 31736900 PMCID: PMC6839393 DOI: 10.3389/fmicb.2019.02454
Source DB: PubMed Journal: Front Microbiol ISSN: 1664-302X Impact factor: 5.640
FIGURE 1Bacterial community dynamics among different developmental stages in Chrysoperla sinica. (A) Overview of development stages of the C. sinica. (B) Rarefaction curves constructed from randomly subsampled data sets with the same number of 16S sequences. The near-saturated rarefaction curve indicates that the vastness of microbial diversity was captured from each sample. (C) Relative abundance of bacteria communities at the phylum level in different groups (Non-parametric Kruskal–Wallis test ∗0.01 < P ≤ 0.05, ∗∗0.001 < P ≤ 0.01, and ∗∗∗P ≤ 0.001). (D) Heat map of major taxa over the life cycle at the genus level. Cluster analysis using the Bray–Curtis distance and the complete-linkage method. Each column represents a single replicate of each of the seven treatments. Columns were clustered according to the similarity of bacterial abundance profiles. Each row represents an OTU assigned to the genus level. Color gradient represents the proportion of species. Plotting scale, from red to blue, indicates the decrease in richness of bacterial communities. Five replicates are labeled 1–5.
FIGURE 2Bacterial community dynamics among different developmental stages in C. sinica. Boxplot of species richness (number of OTUs) (A) and community diversity measured by the Shannon index (B). Different lowercase labels above each group indicates significant differences (one-way ANOVA, LSD post hoc test, P < 0.05) of group mean value. (C) Enterotype analysis of OTU level according to β-diversity metrics of UniFrac. (D) Principal coordinates analysis (PCoA) plot visualizing the data based on β-diversity metrics of UniFrac (NMDS analysis P ≤ 0.05). (E) Unweighted pair-group method with arithmetic means (UPGMA) analysis of microbial community structure based on 16S rRNA gene amplicon sequencing data.