Literature DB >> 31736528

Cuttlefish: Color Mapping for Dynamic Multi-Scale Visualizations.

N Waldin1, M Waldner1, M Le Muzic1, E Gröller1,2, D S Goodsell3, L Autin3, A J Olson3, I Viola1,4.   

Abstract

Visualizations of hierarchical data can often be explored interactively. For example, in geographic visualization, there are continents, which can be subdivided into countries, states, counties and cities. Similarly, in models of viruses or bacteria at the highest level are the compartments, and below that are macromolecules, secondary structures (such as α-helices), amino-acids, and on the finest level atoms. Distinguishing between items can be assisted through the use of color at all levels. However, currently, there are no hierarchical and adaptive color mapping techniques for very large multi-scale visualizations that can be explored interactively. We present a novel, multi-scale, color-mapping technique for adaptively adjusting the color scheme to the current view and scale. Color is treated as a resource and is smoothly redistributed. The distribution adjusts to the scale of the currently observed detail and maximizes the color range utilization given current viewing requirements. Thus, we ensure that the user is able to distinguish items on any level, even if the color is not constant for a particular feature. The coloring technique is demonstrated for a political map and a mesoscale structural model of HIV. The technique has been tested by users with expertise in structural biology and was overall well received.
© 2019 The Authors. Computer Graphics Forum published by Eurographics ‐ The European Association for Computer Graphics and John Wiley & Sons Ltd.

Entities:  

Keywords:  I.3.3 [Computer Graphics]: Picture/Image Generation; I.3.7 [Computer Graphics]: Three‐dimensional Graphics and Realism; Color, Shading, Shadowing, and Texture; illustrative visualization; molecular visualization; multiscale visualization

Year:  2019        PMID: 31736528      PMCID: PMC6850082          DOI: 10.1111/cgf.13611

Source DB:  PubMed          Journal:  Comput Graph Forum        ISSN: 0167-7055            Impact factor:   2.078


  10 in total

Review 1.  Lightness, brightness and transparency: a quarter century of new ideas, captivating demonstrations and unrelenting controversy.

Authors:  Frederick A A Kingdom
Journal:  Vision Res       Date:  2010-09-19       Impact factor: 1.886

2.  Tree Colors: Color Schemes for Tree-Structured Data.

Authors:  Martijn Tennekes; Edwin de Jonge
Journal:  IEEE Trans Vis Comput Graph       Date:  2014-12       Impact factor: 4.579

3.  Browsing zoomable treemaps: structure-aware multi-scale navigation techniques.

Authors:  Renaud Blanch; Eric Lecolinet
Journal:  IEEE Trans Vis Comput Graph       Date:  2007 Nov-Dec       Impact factor: 4.579

4.  Color design for illustrative visualization.

Authors:  Lujin Wang; Joachim Giesen; Kevin T McDonnell; Peter Zolliker; Klaus Mueller
Journal:  IEEE Trans Vis Comput Graph       Date:  2008 Nov-Dec       Impact factor: 4.579

5.  Perceptually driven visibility optimization for categorical data visualization.

Authors:  Sungkil Lee; Mike Sips; Hans-Peter Seidel
Journal:  IEEE Trans Vis Comput Graph       Date:  2013-10       Impact factor: 4.579

6.  Hue-preserving color blending.

Authors:  Johnson Chuang; Daniel Weiskopf; Torsten Möller
Journal:  IEEE Trans Vis Comput Graph       Date:  2009 Nov-Dec       Impact factor: 4.579

7.  Contrast discrimination at high contrasts reveals the influence of local light adaptation on contrast processing.

Authors:  F A Kingdom; P Whittle
Journal:  Vision Res       Date:  1996-03       Impact factor: 1.886

8.  Hierarchical aggregation for information visualization: overview, techniques, and design guidelines.

Authors:  Niklas Elmqvist; Jean-Daniel Fekete
Journal:  IEEE Trans Vis Comput Graph       Date:  2010 May-Jun       Impact factor: 4.579

9.  Increments and decrements: luminance discrimination.

Authors:  P Whittle
Journal:  Vision Res       Date:  1986       Impact factor: 1.886

10.  cellVIEW: a Tool for Illustrative and Multi-Scale Rendering of Large Biomolecular Datasets.

Authors:  Mathieu Le Muzic; Ludovic Autin; Julius Parulek; Ivan Viola
Journal:  Eurographics Workshop Vis Comput Biomed       Date:  2015
  10 in total
  4 in total

Review 1.  Art and Science of the Cellular Mesoscale.

Authors:  David S Goodsell; Arthur J Olson; Stefano Forli
Journal:  Trends Biochem Sci       Date:  2020-03-21       Impact factor: 13.807

2.  Modeling in the Time of COVID-19: Statistical and Rule-based Mesoscale Models.

Authors:  Ngan Nguyen; Ondrej Strnad; Tobias Klein; Deng Luo; Ruwayda Alharbi; Peter Wonka; Martina Maritan; Peter Mindek; Ludovic Autin; David S Goodsell; Ivan Viola
Journal:  IEEE Trans Vis Comput Graph       Date:  2021-01-28       Impact factor: 4.579

3.  Colors in the representation of biological structures.

Authors:  Monica Zoppè
Journal:  J Integr Bioinform       Date:  2022-07-04

4.  Considering best practices in color palettes for molecular visualizations.

Authors:  Laura Garrison; Stefan Bruckner
Journal:  J Integr Bioinform       Date:  2022-06-22
  4 in total

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