Literature DB >> 31734603

Reductionist synthetic community approaches in root microbiome research.

Yong-Xin Liu1, Yuan Qin2, Yang Bai3.   

Abstract

Synthetic community (SynCom) approaches can provide functional and mechanistic insights into how plants regulate their microbiomes, and how the microbiome in turn influences plant growth and health. Microbial cultivation and reconstruction play pivotal roles in this process, which enables researchers to reproducibly investigate the interactions between plants and a major proportion of plant-associated microbes in controlled laboratory conditions. Here, we summarize the emergence, current achievements, and future opportunities for using SynCom experiments in plant microbiome research, with a focus on plant root-associated bacteria.
Copyright © 2019. Published by Elsevier Ltd.

Mesh:

Year:  2019        PMID: 31734603     DOI: 10.1016/j.mib.2019.10.010

Source DB:  PubMed          Journal:  Curr Opin Microbiol        ISSN: 1369-5274            Impact factor:   7.934


  18 in total

1.  High-throughput cultivation and identification of bacteria from the plant root microbiota.

Authors:  Jingying Zhang; Yong-Xin Liu; Xiaoxuan Guo; Yuan Qin; Ruben Garrido-Oter; Paul Schulze-Lefert; Yang Bai
Journal:  Nat Protoc       Date:  2021-01-13       Impact factor: 13.491

2.  Elucidating Plant-Microbe-Environment Interactions Through Omics-Enabled Metabolic Modelling Using Synthetic Communities.

Authors:  Ashley E Beck; Manuel Kleiner; Anna-Katharina Garrell
Journal:  Front Plant Sci       Date:  2022-06-20       Impact factor: 6.627

3.  Diversity Shifts in the Root Microbiome of Cucumber Under Different Plant Cultivation Substrates.

Authors:  Fangyuan Zhou; Xiaoqing Wu; Yunxiao Gao; Susu Fan; Hongzi Zhou; Xinjian Zhang
Journal:  Front Microbiol       Date:  2022-05-19       Impact factor: 6.064

4.  Synthetic Bacterial Community of Duckweed: A Simple and Stable System to Study Plant-microbe Interactions.

Authors:  Hidehiro Ishizawa; Minami Tada; Masashi Kuroda; Daisuke Inoue; Hiroyuki Futamata; Michihiko Ike
Journal:  Microbes Environ       Date:  2020       Impact factor: 2.912

Review 5.  A practical guide to amplicon and metagenomic analysis of microbiome data.

Authors:  Yong-Xin Liu; Yuan Qin; Tong Chen; Meiping Lu; Xubo Qian; Xiaoxuan Guo; Yang Bai
Journal:  Protein Cell       Date:  2020-05-11       Impact factor: 14.870

6.  From Microbial Dynamics to Functionality in the Rhizosphere: A Systematic Review of the Opportunities With Synthetic Microbial Communities.

Authors:  Olga Marín; Bernardo González; María Josefina Poupin
Journal:  Front Plant Sci       Date:  2021-06-03       Impact factor: 5.753

7.  Litterbox-A gnotobiotic Zeolite-Clay System to Investigate Arabidopsis-Microbe Interactions.

Authors:  Moritz Miebach; Rudolf O Schlechter; John Clemens; Paula E Jameson; Mitja N P Remus-Emsermann
Journal:  Microorganisms       Date:  2020-03-25

Review 8.  Recent advances in the role of plant metabolites in shaping the root microbiome.

Authors:  Richard P Jacoby; Li Chen; Melina Schwier; Anna Koprivova; Stanislav Kopriva
Journal:  F1000Res       Date:  2020-02-26

9.  Gut microbiota in children with juvenile idiopathic arthritis: characteristics, biomarker identification, and usefulness in clinical prediction.

Authors:  Xubo Qian; Yong-Xin Liu; Xiaohong Ye; Wenjie Zheng; Shaoxia Lv; Miaojun Mo; Jinjing Lin; Wenqin Wang; Weihan Wang; Xianning Zhang; Meiping Lu
Journal:  BMC Genomics       Date:  2020-04-07       Impact factor: 3.969

10.  Synthetic community with six Pseudomonas strains screened from garlic rhizosphere microbiome promotes plant growth.

Authors:  Lubo Zhuang; Yan Li; Zhenshuo Wang; Yue Yu; Nan Zhang; Chang Yang; Qingchao Zeng; Qi Wang
Journal:  Microb Biotechnol       Date:  2020-08-06       Impact factor: 5.813

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