Literature DB >> 31732144

Continuous Dynamic Modeling of Regulated Cell Adhesion: Sorting, Intercalation, and Involution.

Jason M Ko1, Daniel Lobo2.   

Abstract

Cell-cell adhesion is essential for tissue growth and multicellular pattern formation and crucial for the cellular dynamics during embryogenesis and cancer progression. Understanding the dynamical gene regulation of cell adhesion molecules (CAMs) responsible for the emerging spatial tissue behaviors is a current challenge because of the complexity of these nonlinear interactions and feedback loops at different levels of abstraction-from genetic regulation to whole-organism shape formation. To extend our understanding of cell and tissue behaviors due to the regulation of adhesion molecules, here we present a novel, to our knowledge, model for the spatial dynamics of cellular patterning, growth, and shape formation due to the differential expression of CAMs and their regulation. Capturing the dynamic interplay between genetic regulation, CAM expression, and differential cell adhesion, the proposed continuous model can explain the complex and emergent spatial behaviors of cell populations that change their adhesion properties dynamically because of inter- and intracellular genetic regulation. This approach can demonstrate the mechanisms responsible for classical cell-sorting behaviors, cell intercalation in proliferating populations, and the involution of germ layer cells induced by a diffusing morphogen during gastrulation. The model makes predictions on the physical parameters controlling the amplitude and wavelength of a cellular intercalation interface, as well as the crucial role of N-cadherin regulation for the involution and migration of cells beyond the gradient of the morphogen Nodal during zebrafish gastrulation. Integrating the emergent spatial tissue behaviors with the regulation of genes responsible for essential cellular properties such as adhesion will pave the way toward understanding the genetic regulation of large-scale complex patterns and shapes formation in developmental, regenerative, and cancer biology.
Copyright © 2019 Biophysical Society. Published by Elsevier Inc. All rights reserved.

Entities:  

Year:  2019        PMID: 31732144      PMCID: PMC6895740          DOI: 10.1016/j.bpj.2019.10.032

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  66 in total

1.  Visualizing long-range movement of the morphogen Xnr2 in the Xenopus embryo.

Authors:  P Huw Williams; Anja Hagemann; Marcos González-Gaitán; James C Smith
Journal:  Curr Biol       Date:  2004-11-09       Impact factor: 10.834

2.  Self-propelled particle model for cell-sorting phenomena.

Authors:  Julio M Belmonte; Gilberto L Thomas; Leonardo G Brunnet; Rita M C de Almeida; Hugues Chaté
Journal:  Phys Rev Lett       Date:  2008-06-20       Impact factor: 9.161

3.  Adding adhesion to a chemical signaling model for somite formation.

Authors:  Nicola J Armstrong; Kevin J Painter; Jonathan A Sherratt
Journal:  Bull Math Biol       Date:  2008-09-03       Impact factor: 1.758

Review 4.  Nectin family of cell-adhesion molecules: structural and molecular aspects of function and specificity.

Authors:  Dibyendu Samanta; Steven C Almo
Journal:  Cell Mol Life Sci       Date:  2014-10-19       Impact factor: 9.261

5.  Computational discovery and in vivo validation of hnf4 as a regulatory gene in planarian regeneration.

Authors:  Daniel Lobo; Junji Morokuma; Michael Levin
Journal:  Bioinformatics       Date:  2016-05-10       Impact factor: 6.937

6.  Endodermal germ-layer formation through active actin-driven migration triggered by N-cadherin.

Authors:  Florence A Giger; Nicolas B David
Journal:  Proc Natl Acad Sci U S A       Date:  2017-09-05       Impact factor: 11.205

7.  Metastatic State of Cancer Cells May Be Indicated by Adhesion Strength.

Authors:  Alexander Fuhrmann; Afsheen Banisadr; Pranjali Beri; Thea D Tlsty; Adam J Engler
Journal:  Biophys J       Date:  2017-02-28       Impact factor: 4.033

8.  Induction of the mesendoderm in the zebrafish germ ring by yolk cell-derived TGF-beta family signals and discrimination of mesoderm and endoderm by FGF.

Authors:  A Rodaway; H Takeda; S Koshida; J Broadbent; B Price; J C Smith; R Patient; N Holder
Journal:  Development       Date:  1999-06       Impact factor: 6.868

9.  A bioinformatics expert system linking functional data to anatomical outcomes in limb regeneration.

Authors:  Daniel Lobo; Erica B Feldman; Michelle Shah; Taylor J Malone; Michael Levin
Journal:  Regeneration (Oxf)       Date:  2014-04

10.  Towards a bioinformatics of patterning: a computational approach to understanding regulative morphogenesis.

Authors:  Daniel Lobo; Taylor J Malone; Michael Levin
Journal:  Biol Open       Date:  2012-11-26       Impact factor: 2.422

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  5 in total

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Authors:  Li Chen; Kevin Painter; Christina Surulescu; Anna Zhigun
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2020-07-27       Impact factor: 6.237

2.  Computational Systems Biology of Morphogenesis.

Authors:  Jason M Ko; Reza Mousavi; Daniel Lobo
Journal:  Methods Mol Biol       Date:  2022

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Authors:  Daniel Lobo
Journal:  Methods Mol Biol       Date:  2022

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Journal:  Nucleic Acids Res       Date:  2020-07-02       Impact factor: 16.971

5.  SysMod: the ISCB community for data-driven computational modelling and multi-scale analysis of biological systems.

Authors:  Andreas Dräger; Tomáš Helikar; Matteo Barberis; Marc Birtwistle; Laurence Calzone; Claudine Chaouiya; Jan Hasenauer; Jonathan R Karr; Anna Niarakis; María Rodríguez Martínez; Julio Saez-Rodriguez; Juilee Thakar
Journal:  Bioinformatics       Date:  2021-06-24       Impact factor: 6.937

  5 in total

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