| Literature DB >> 31730458 |
Amir Tajbakhsh1,2,3, Mostafa Fazeli1,3, Mehdi Rezaee3,4, Faezeh Ghasemi5, Mastoureh Momen Heravi6, Aida Gholoobi3, Zahra Meshkat7.
Abstract
BACKGROUND: A 32-base pair deletion (∆32) in the open reading frame (ORF) of C-C motif chemokine receptor 5 (CCR5) seems to be a protective variant against immune system diseases, especially human immunodeficiency virus type 1 (HIV-1). We aimed to assess the frequency of CCR5∆32 in the healthy Iranian population.Entities:
Keywords: CC chemokine receptor type 5 (CCR5); Epidemiology; Geographic spread; HIV-1; Rare alleles
Mesh:
Substances:
Year: 2019 PMID: 31730458 PMCID: PMC6858674 DOI: 10.1186/s12881-019-0913-9
Source DB: PubMed Journal: BMC Med Genet ISSN: 1471-2350 Impact factor: 2.103
Fig. 1Scheme 1 shows the role of CCR5Δ32 in protection against HIV-1 infection; (a) The normal cell with wild type CCR5 gene: 1. transcription, 2. mRNA transfer to the cytosol, 3. translation, 4. conformation and transferring to the cell membrane, 5. HIV-1 attachment and entry, 6. production of HIV-1 RNA, 7. transferring HIV-1 RNA to the nucleus; (b) A cell with CCR5Δ32 gene: 1. transcription, 2. mRNA transfer to cytosol, 3. translation, 4. wrong conformation and degradation, 5. the absence of CCR5 on the cell surface and naught HIV-1 entry through CCR5
The characteristics of study samples
| Wild type | Mutantb | Heterozygote | Total | |
|---|---|---|---|---|
| Sexa | 46.1 (m), 53.9 (f) | 100.0 (f) | 45.5 (m), 54.5 (f) | 45.9 (m), 54.1 (f) |
| Age (yr) | 46.09 ± 7.25 | 37.00 | 46.45 ± 8.12 | 46.1 ± 7.27 |
| Weight (Kg) | 71.92 ± 13.27 | 61.2 | 77.11 ± 11.8 | 72.04 ± 13.2 |
| Height (m) | 1.62 ± .09 | 1.51 | 1.64 ± .10 | 1.62 ± .1 |
| BMI | 27.5 ± 4.79 | 26.84 | 29.21 ± 6.29 | 27.5 ± 4.8 |
| Inflammatory marker | ||||
| Hs-CRP | 1.64 (3.11–1.00) | 0.75 | 1.45 (3.40–0.87) | 1.62 (3.10–1.00) |
| Smoking | ||||
| Non-smokera | 63.5 | 100.0 | 81.8 | 64.1 |
| Ex-smokera | 10.0 | 0.0 | 18.2 | 9.7 |
| Current smokera | 26.5 | 0.0 | 0.0 | 26.2 |
| Diabetes | ||||
| Diabetic conditiona | 15.4 | 0.0 | 20.0 | 15.5 |
| Biochemical parameters | ||||
| Glucose (mg/dL) | 82.0 (92.0–74.5) | 71.00 | 82.0 (96.0–74.0) | 82.0 (92.0–74.5) |
| Cholesterol (mg/dL) | 187.00 (214.00–163.00) | 175.00 | 182.00 (233.00–153.00) | 187.00 (214.00–163.00 |
| HDL (mg/dL) | 41.5 ± 9.0 | 39.30 | 41.43 ± 10.82 | 41.5 ± 9.0 |
| Triglyceride (mg/dL) | 116.0 (172.0–81.50) | 74.00 | 92.00 (210.00–74.00) | 115.0 (172.0–81.50) |
| LDL (mg/dL) | 118.88 (141.6–95.75) | 102.06 | 121.88 (160.80–84.00) | 118.92 (141.6–95.75) |
The results showed as mean ± SD and median (IQ3-IQ1) for normal and abnormal distribution data, respectively. a The numbers represent percentage of prevalence; b mutant group have only one subject
Fig. 2The gel electrophoresis of PCR amplified DNA with CCR5∆32 allele. Lanes 1, and 2, wild type (CCR5 ); lane 3: mutant type (CCR5 ); lane 4: heterozygous (CCR5 ); ladder: 100 bp DNA size marker; N: negative control
The results of the genotyping samples
| Genotype form | Genotype frequency (number (%)) | Allele frequency | ||||
|---|---|---|---|---|---|---|
| Normal homozygote CCR5 Wild/ Wild | Heterozygote | Mutant homozygote | Total | Wild | ∆32 | |
| Observed | 388 (97%) | 11 (2.75%) | 1 (0.25%) | 400 | 0.983 | 0.016 |
| Observed Frequencies | 0.97 | 0.027 | 0.002 | 1 | ||
| Expected | 387.105 | 12.788 | 0.105 | 400 | ||
| Expected Frequencies | 0.967 | 0.031 | 0.0002 | 1 | ||
| X2= | 0.002 | 0.250 | 7.573 | |||
| Overall X2= | 7.825337719 | Overall (P | ||||
Comparison of CCR5∆32 allele distribution in Iranian healthy individuals
| Author | Geographical position in Iran | Provinces | Allele frequency | Number of | HWE | |
|---|---|---|---|---|---|---|
| Present study | Iran (North East) | Khorasan | 0.0162 | 400 | 0.020 | |
| Arababadi et al. | Iran (South East) | Kerman | 0.0033 | 300 | 0.99 | |
| Shahbazi et al. | Iran (North) | Golestan | 0.0900 | 380 | 0002 | |
| Omrani et al. | Iran (North West) | Uromia | 0.0105 | 190 | 0.99 | |
| Gharagozloo et al. | Iran (South) | Fars | 0.0146 | 395 | 1.0 | |
| Rahimi et al. | Iran | Hormozgan | 0.0057 | 30 | 530 | 0.003 |
| Gilan | 20 | |||||
| East Azarbaijan | 50 | |||||
| West Azarbaijan | 50 | |||||
| Ghazvin | 45 | |||||
| Tehran | 100 | |||||
| Semnan | 30 | |||||
| Kurdistan | 35 | |||||
| Ghom | 30 | |||||
| Isfahan | 40 | |||||
| Yazd | 30 | |||||
| Khorasan | 40 | |||||
| Lorestan | 30 | |||||
| Heydarifard et al. | North | Gorgan | 0.0150 | 300 | 0.7920 | |
| Bineshian et al. | Between Center and North | Tehran | 0 | 100 | – | |
| Abdolmohammadi et al. | North | Golestan | 0.072 | 455 | 0.004 | |