Literature DB >> 31730197

RaNA-Seq: Interactive RNA-Seq analysis from FASTQ files to functional analysis.

Carlos Prieto1, David Barrios1.   

Abstract

SUMMARY: RaNA-Seq is a cloud platform for the rapid analysis and visualization of RNA-Seq data. It performs a full analysis in minutes by quantifying FASTQ files, calculating quality control metrics, running differential expression analyses and enabling the explanation of results with functional analyses. Our analysis pipeline applies generally accepted and reproducible protocols that can be applied with two simple steps in its web interface. Analysis results are presented as interactive graphics and reports, ready for their interpretation and publication. AVAILABILITY: RaNA-Seq web service is freely available online at https://ranaseq.eu. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
© The Author(s) (2019). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Year:  2019        PMID: 31730197     DOI: 10.1093/bioinformatics/btz854

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  13 in total

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Journal:  Cell Metab       Date:  2022-04-05       Impact factor: 31.373

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Journal:  Sci Transl Med       Date:  2021-02-10       Impact factor: 19.319

5.  Aripiprazole as a Candidate Treatment of COVID-19 Identified Through Genomic Analysis.

Authors:  Benedicto Crespo-Facorro; Miguel Ruiz-Veguilla; Javier Vázquez-Bourgon; Ana C Sánchez-Hidalgo; Nathalia Garrido-Torres; Jose M Cisneros; Carlos Prieto; Jesus Sainz
Journal:  Front Pharmacol       Date:  2021-03-02       Impact factor: 5.810

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Authors:  Martín Garrido-Rodriguez; Daniel Lopez-Lopez; Francisco M Ortuno; María Peña-Chilet; Eduardo Muñoz; Marco A Calzado; Joaquin Dopazo
Journal:  PLoS Comput Biol       Date:  2021-02-11       Impact factor: 4.475

7.  ProkSeq for complete analysis of RNA-Seq data from prokaryotes.

Authors:  A K M Firoj Mahmud; Nicolas Delhomme; Soumyadeep Nandi; Maria Fällman
Journal:  Bioinformatics       Date:  2020-12-26       Impact factor: 6.937

8.  Phytochemical‑rich herbal formula ATG‑125 protects against sucrose‑induced gastrocnemius muscle atrophy by rescuing Akt signaling and improving mitochondrial dysfunction in young adult mice.

Authors:  Ching-Chuan Yeh; Hsuan-Miao Liu; Ming-Chung Lee; Yann-Lii Leu; Wei-Han Chiang; Hen-Hong Chang; Tzung-Yan Lee
Journal:  Mol Med Rep       Date:  2021-12-16       Impact factor: 2.952

9.  Impact of spaceflight and artificial gravity on sulfur metabolism in mouse liver: sulfur metabolomic and transcriptomic analysis.

Authors:  Iwao Ohtsu; Kengo Suzuki; Ryo Kurosawa; Ryota Sugimoto; Hiroe Imai; Kohei Atsuji; Koji Yamada; Yusuke Kawano
Journal:  Sci Rep       Date:  2021-11-08       Impact factor: 4.379

10.  Titin-truncating mutations associated with dilated cardiomyopathy alter length-dependent activation and its modulation via phosphorylation.

Authors:  Petr G Vikhorev; Natalia N Vikhoreva; WaiChun Yeung; Amy Li; Sean Lal; Cristobal G Dos Remedios; Cheavar A Blair; Maya Guglin; Kenneth S Campbell; Magdi H Yacoub; Pieter de Tombe; Steven B Marston
Journal:  Cardiovasc Res       Date:  2022-01-07       Impact factor: 10.787

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