Literature DB >> 31723311

Using Chemical Knowledge to Uncover New Biological Function: Discovery of the Cylindrocyclophane Biosynthetic Pathway.

Hitomi Nakamura1, Emily P Balskus1.   

Abstract

An understanding of organic chemistry can play a central role in uncovering enzymes with new biochemical functions. We have recently identified the enzymes involved in the biosynthesis of the cylindrocyclophanes, a structurally unique family of natural products, and found that this pathway employs a remarkable macrocyclization event that requires functionalization of an unactivated carbon atom. This work illustrates the potential of using chemically guided approaches for enzyme discovery.

Entities:  

Keywords:  Biosynthesis; cylindrocyclophanes; enzymes; genomics; natural products

Year:  2013        PMID: 31723311      PMCID: PMC6853628          DOI: 10.1055/s-0033-1338879

Source DB:  PubMed          Journal:  Synlett        ISSN: 0936-5214            Impact factor:   2.454


  31 in total

1.  An unusually large multifunctional polypeptide in the erythromycin-producing polyketide synthase of Saccharopolyspora erythraea.

Authors:  J Cortes; S F Haydock; G A Roberts; D J Bevitt; P F Leadlay
Journal:  Nature       Date:  1990-11-08       Impact factor: 49.962

Review 2.  Recent advances in biomimetic natural product synthesis.

Authors:  Paul G Bulger; Sharan K Bagal; Rodolfo Marquez
Journal:  Nat Prod Rep       Date:  2008-01-23       Impact factor: 13.423

3.  Asymmetric total synthesis of cylindrocyclophanes A and F through cyclodimerization and a Ramberg-Bäcklund reaction.

Authors:  K C Nicolaou; Ya-Ping Sun; Henry Korman; David Sarlah
Journal:  Angew Chem Int Ed Engl       Date:  2010-08-09       Impact factor: 15.336

Review 4.  Protein function prediction: towards integration of similarity metrics.

Authors:  Serkan Erdin; Andreas Martin Lisewski; Olivier Lichtarge
Journal:  Curr Opin Struct Biol       Date:  2011-02-24       Impact factor: 6.809

Review 5.  Isoprenoid-like alkylations in polyketide biosynthesis.

Authors:  Christopher T Calderone
Journal:  Nat Prod Rep       Date:  2008-06-18       Impact factor: 13.423

6.  Syntheses of naturally occurring cytotoxic [7.7]paracyclophanes, (-)-cylindrocyclophane A and its enantiomer, and implications for biological activity.

Authors:  Hiroyuki Yamakoshi; Fumiya Ikarashi; Masataka Minami; Masatoshi Shibuya; Tsutomu Sugahara; Naoki Kanoh; Hisatsugu Ohori; Hiroyuki Shibata; Yoshiharu Iwabuchi
Journal:  Org Biomol Chem       Date:  2009-07-14       Impact factor: 3.876

7.  Mining microbial genomes for new natural products and biosynthetic pathways.

Authors:  Gregory L Challis
Journal:  Microbiology (Reading)       Date:  2008-06       Impact factor: 2.777

8.  Cylindrocyclophane biosynthesis involves functionalization of an unactivated carbon center.

Authors:  Hitomi Nakamura; Hilary A Hamer; Gopal Sirasani; Emily P Balskus
Journal:  J Am Chem Soc       Date:  2012-11-02       Impact factor: 15.419

9.  Enzymic activation and transfer of fatty acids as acyl-adenylates in mycobacteria.

Authors:  Omita A Trivedi; Pooja Arora; Vijayalakshmi Sridharan; Rashmi Tickoo; Debasisa Mohanty; Rajesh S Gokhale
Journal:  Nature       Date:  2004-03-25       Impact factor: 49.962

10.  Bioinformatics in microbial biotechnology--a mini review.

Authors:  Arvind K Bansal
Journal:  Microb Cell Fact       Date:  2005-06-28       Impact factor: 5.328

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