Literature DB >> 31723261

Marine Proteobacteria metabolize glycolate via the β-hydroxyaspartate cycle.

Lennart Schada von Borzyskowski1, Francesca Severi2, Karen Krüger3, Lucas Hermann4, Alexandre Gilardet2, Felix Sippel2, Bianca Pommerenke2, Peter Claus2, Niña Socorro Cortina2, Timo Glatter5, Stefan Zauner6, Jan Zarzycki2, Bernhard M Fuchs3, Erhard Bremer4,7, Uwe G Maier6,7, Rudolf I Amann3, Tobias J Erb8,9.   

Abstract

One of the most abundant sources of organic carbon in the ocean is glycolate, the secretion of which by marine phytoplankton results in an estimated annual flux of one petagram of glycolate in marine environments1. Although it is generally accepted that glycolate is oxidized to glyoxylate by marine bacteria2-4, the further fate of this C2 metabolite is not well understood. Here we show that ubiquitous marine Proteobacteria are able to assimilate glyoxylate via the β-hydroxyaspartate cycle (BHAC) that was originally proposed 56 years ago5. We elucidate the biochemistry of the BHAC and describe the structure of its key enzymes, including a previously unknown primary imine reductase. Overall, the BHAC enables the direct production of oxaloacetate from glyoxylate through only four enzymatic steps, representing-to our knowledge-the most efficient glyoxylate assimilation route described to date. Analysis of marine metagenomes shows that the BHAC is globally distributed and on average 20-fold more abundant than the glycerate pathway, the only other known pathway for net glyoxylate assimilation. In a field study of a phytoplankton bloom, we show that glycolate is present in high nanomolar concentrations and taken up by prokaryotes at rates that allow a full turnover of the glycolate pool within one week. During the bloom, genes that encode BHAC key enzymes are present in up to 1.5% of the bacterial community and actively transcribed, supporting the role of the BHAC in glycolate assimilation and suggesting a previously undescribed trophic interaction between autotrophic phytoplankton and heterotrophic bacterioplankton.

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Year:  2019        PMID: 31723261     DOI: 10.1038/s41586-019-1748-4

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  55 in total

1.  Beta-Hydroxyaspartate pathway: a new route for biosyntheses from glyoxylate.

Authors:  H L KORNBERG; J G MORRIS
Journal:  Nature       Date:  1963-02-02       Impact factor: 49.962

2.  Excretion of glycolic acid by algae during photosynthesis.

Authors:  N E TOLBERT; L P ZILL
Journal:  J Biol Chem       Date:  1956-10       Impact factor: 5.157

3.  Conversion of glyoxylate to hydroxypyruvate by extracts of Escherichia coli.

Authors:  S S BARKULIS; G KRAKOW
Journal:  Biochim Biophys Acta       Date:  1956-09

4.  Primary production of the biosphere: integrating terrestrial and oceanic components

Authors: 
Journal:  Science       Date:  1998-07-10       Impact factor: 47.728

5.  Detection of glycolate oxidase gene glcD diversity among cultured and environmental marine bacteria.

Authors:  W W Y Lau; E V Armbrust
Journal:  Environ Microbiol       Date:  2006-10       Impact factor: 5.491

6.  Succession and diel transcriptional response of the glycolate-utilizing component of the bacterial community during a spring phytoplankton bloom.

Authors:  Winnie W Y Lau; Richard G Keil; E Virginia Armbrust
Journal:  Appl Environ Microbiol       Date:  2007-02-09       Impact factor: 4.792

7.  Nutrient requirements for growth of the extreme oligotroph 'Candidatus Pelagibacter ubique' HTCC1062 on a defined medium.

Authors:  Paul Carini; Laura Steindler; Sara Beszteri; Stephen J Giovannoni
Journal:  ISME J       Date:  2012-10-25       Impact factor: 10.302

8.  Unique glycine-activated riboswitch linked to glycine-serine auxotrophy in SAR11.

Authors:  H James Tripp; Michael S Schwalbach; Michelle M Meyer; Joshua B Kitner; Ronald R Breaker; Stephen J Giovannoni
Journal:  Environ Microbiol       Date:  2009-01       Impact factor: 5.491

9.  Tuning fresh: radiation through rewiring of central metabolism in streamlined bacteria.

Authors:  Alexander Eiler; Rhiannon Mondav; Lucas Sinclair; Leyden Fernandez-Vidal; Douglas G Scofield; Patrick Schwientek; Manuel Martinez-Garcia; David Torrents; Katherine D McMahon; Siv Ge Andersson; Ramunas Stepanauskas; Tanja Woyke; Stefan Bertilsson
Journal:  ISME J       Date:  2016-01-19       Impact factor: 10.302

10.  Light-Enhanced Microbial Organic Carbon Yield.

Authors:  John R Casey; Sara Ferrón; David M Karl
Journal:  Front Microbiol       Date:  2017-11-16       Impact factor: 5.640

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