| Literature DB >> 31721304 |
Zhixiong Zhong1,2,3,4,5, Heming Wu2,3,4,5,6, Wei Zhong1,2,3,4,5, Qifeng Zhang1,2,3,4,5, Zhikang Yu2,3,4,5,6.
Abstract
OBJECTIVE: Acute Myocardial Infarction (AMI) is the most severe type of coronary atherosclerotic heart diseases. MiRNA is a class of endogenous noncoding small molecule RNA, which plays an important regulatory role in the development of some diseases.Entities:
Keywords: RNA sequencing; acute myocardial infarction; biomarker; expression profiles; microRNA
Mesh:
Substances:
Year: 2019 PMID: 31721304 PMCID: PMC7083511 DOI: 10.1002/jcla.23099
Source DB: PubMed Journal: J Clin Lab Anal ISSN: 0887-8013 Impact factor: 2.352
The baseline clinical characteristics
| Variable | Non‐AMI | AMI |
|
|---|---|---|---|
| Age (y) | 53.50 ± 8.67 | 55.38 ± 10.28 | .321 |
| Sex (male) | 3 (50%) | 9 (56.25%) | .560 |
| Smoking | 3 (50%) | 11 (68.75%) | .392 |
| Drinking | 2 (33.33%) | 6 (37.5%) | .615 |
| Systolic BP (mm Hg) | 129.5 ± 7.26 | 136.2 ± 22.7 | .003 |
| Diastolic BP(mm Hg) | 82.67 ± 9.52 | 83.00 ± 16.77 | .208 |
| Hypertension | 1 (16.7%) | 8 (50%) | .145 |
| Diabetes | 1 (16.7%) | 3 (18.75%) | .698 |
| Hyperlipidemia | 1 (16.7%) | 6 (37.5%) | .314 |
| TC, mmol/L | 4.40 ± 1.09 | 6.31 ± 0.59 | .021 |
| TG, mmol/L | 1.18 ± 0.54 | 1.91 ± 1.53 | .052 |
| HDL‐C, mmol/L | 1.06 ± 0.48 | 1.22 ± 0.31 | .160 |
| LDL‐C, mmol/L | 2.24 ± 0.17 | 2.99 ± 1.09 | .016 |
Abbreviations: HDL‐C, high‐density lipoprotein cholesterol; LDL‐C, low‐density lipoprotein cholesterol; TC, total cholesterol; TG, triglycerides.
Figure 1Hierarchical clustering of miRNAs in patients with or without AMI
Figure 2Volcano plot of differential miRNA expression. X‐axis: log2(fold change); Y‐axis: −1 × log10 (corrected q‐value) for each probes
Figure 3GO analysis of differentially expressed miRNAs that covers three domains: biological process, cellular component, and molecular function. X‐axis: GO terms of biological process, cellular component, and molecular function. The green column indicates the biological process, the red column indicates cellular component, and the blue column indicates molecular function. Y‐axis on the left: numbers of genes (miRNAs)
Figure 4KEGG Pathway analysis of differentially expressed miRNAs. Pathway analysis is a functional analysis mapping genes to KEGG pathway and other pathway databases. The lower the P‐value, the more significant the pathway
Confirmation of differentially expressed microRNAs by qRT‐PCR
| microRNA | qRT‐PCR | Fold change by high‐throughput sequencing | |||||
|---|---|---|---|---|---|---|---|
| Average Ct in AMI | GAPDH average Ct in AMI | AMI ΔCt (Average Ct − GAPDH Average Ct) | Non‐AMI ΔCt (Average Ct − GAPDH Average Ct) | ΔΔCt (AMI ΔCt − non‐AMI ΔCt) | Fold change | ||
| hsa‐miR‐93‐5p | 29.92 | 23.22 | 6.70 | 8.88 | −2.18 | 4.5315 | 4.0225 |
| hsa‐miR‐126‐5p | 31.21 | 22.90 | 8.31 | 10.67 | −2.36 | 5.1337 | 4.3720 |
| hsa‐miR‐199a‐5p | 31.11 | 23.74 | 7.37 | 8.73 | −1.36 | 2.5668 | 2.1108 |
| hsa‐miR‐499a‐5p | 31.68 | 22.38 | 9.30 | 12.19 | −2.89 | 7.4127 | 6.7379 |
| hsa‐miR‐615‐3p | 31.06 | 23.60 | 7.46 | 5.70 | 1.76 | 0.2952 | 0.2385 |
| hsa‐miR‐939‐5p | 30.43 | 23.46 | 6.97 | 4.12 | 2.85 | 0.1387 | 0.1768 |
| hsa‐miR‐1228‐5p | 27.68 | 22.21 | 5.47 | 2.14 | 3.33 | 0.0994 | 0.1192 |
| hsa‐miR‐6805‐5p | 29.37 | 23.79 | 5.58 | 2.32 | 3.26 | 0.1044 | 0.0818 |
Figure 5Confirmation of differentially expressed in microRNAs by qRT‐PCR. **P < .01
Figure 6ROC curve analyzed the diagnostic value of circulating differentially expressed miRNAs were randomly selected for differentiating between AMI patients and non‐AMI controls
Areas under the ROC curve and predictive value of four upregulated miRNAs and four downregulated miRNAs
| hsa‐miR‐93‐5p | hsa‐miR‐126‐5p | hsa‐miR‐199a‐5p | hsa‐miR‐499a‐5p | hsa‐miR‐615‐3p | hsa‐miR‐939‐5p | hsa‐miR‐1228‐5p | hsa‐miR‐6805‐5p | |
|---|---|---|---|---|---|---|---|---|
| 2−ΔΔCt | 1.77 ± 0.51 | 1.74 ± 0.40 | 1.73 ± 0.45 | 2.13 ± 0.56 | 0.69 ± 0.29 | 0.63 ± 0.25 | 0.73 ± 0.25 | 0.80 ± 0.23 |
| 95% CI | 0.862‐1.000 | 0.838‐1.000 | 0.868‐1.000 | 0.917‐1.000 | 0.520‐0.855 | 0.509‐0.843 | 0.547‐0.885 | 0.917‐1.000 |
|
| <.001 | <.001 | <.001 | <.001 | .042 | .057 | .019 | .250 |
| AUC | 0.936 | 0.919 | 0.936 | 0.965 | 0.688 | 0.676 | 0.716 | 0.606 |
| Cut‐off point | 1.38 | 1.39 | 1.30 | 1.61 | 0.70 | – | 0.815 | – |
| Specificity (%) | 95 | 85 | 85 | 95 | 80 | – | 70 | – |
| Sensitivity (%) | 75 | 80 | 80 | 85 | 60 | – | 70 | – |
2−ΔΔCt, relative expression of miRNAs (mean ± SD); 95% Cl, 95% confidence interval; AUC, area under the ROC curve.