Literature DB >> 31720328

Correlation data of (Z)-1-[4-(trifluoromethyl)benzylidene]thiosemicarbazide via spectroscopic methods and Density Functional Theory studies.

Uwaisulqarni M Osman1, Azieda Syafika N Farizal1, Maisara Abdul Kadir1, Mohd Hasmizam Razali1, Mohd Zul Helmi Rozaini2, Suhana Arshad3.   

Abstract

New compound, namely (Z)-1-[4-(trifluoromethyl)benzylidene]thiosemicarbazide was successfully synthesized using thiosemicarbazide with 4-(trifluoromethyl)-benzaldehyde in ethanol solution. The data presented in this articles is related to our research articles entitled "Crystal Structure of (Z)-1-[4-(Trifluoromethyl)benzylidene]thiosemicarbazide" (Osman et al., 2017) [1]. This work shows the continue data from experimental spectroscopic measurement which are Fourier Transform Infrared (FTIR) and 13C Nuclear Magnetic Resonance (13C NMR). Assessment on the correlation with theoretical computational data was also carried out through GaussView 5.0.9 and Gaussian09 software. Molecular Electrostatic Potential (MEP) and Highest Occupied Molecular Orbital-Lowest Unoccupied Molecular Orbital (HOMO-LUMO) were also illustrated.
© 2019 The Authors.

Entities:  

Keywords:  DFT; Gaussian; Synthesis; Thiosemicarbazide

Year:  2019        PMID: 31720328      PMCID: PMC6838805          DOI: 10.1016/j.dib.2019.104673

Source DB:  PubMed          Journal:  Data Brief        ISSN: 2352-3409


Specifications Table The mentioned data is useful to synthetic researchers who developing chemical database that specifically related with synthesizing thiomisecarbazide derivatives. The details in the experimental and theoretical computational data is important to produce thiosemicarbazide derivatives for potential used in polymer electrolytes. The data obtained from IR and13C NMR spectroscopic methods are important in structure elucidation of presence molecule.

Data

Experimental and theoretical computational data for both FTIR and 13C NMR spectroscopy are presented accordingly in Fig. 1, Fig. 2, Fig. 4, Fig. 5 to be used as complementary data for crystal of (Z)-1-[4-(trifluoromethyl)benzylidene]thiosemicarbazide [1] with CCDC:1507979 and were supported by other previous publications [2,3]. Both Fig. 3, Fig. 6 tabulates the correlation graph between experimental and theoretical computational data. In Fig. 7, Fig. 8 were presented the Molecular Electrostatic Potential (MEP) and Highest Occupied Molecular Orbital – Lowest Unoccupied Molecular Orbital (HOMO-LUMO), respectively. Whereas, Table 1 was calculated data derived from energy gap values using similar equation as previous reported [4].
Fig. 1

Experimental FTIR spectrum of (Z)-1-[4-(Trifluoromethyl)benzylidene]thiosemicarbazide.

Fig. 2

Theoretical FTIR spectrum of (Z)-1-[4-(Trifluoromethyl)benzylidene]thiosemicarbazide (Zero-point vibrational energy = 453.584 kJ/Mol).

Fig. 4

Experimental 13C NMR spectrum of (Z)-1-[4-(Trifluoromethyl)benzylidene]thiosemicarbazide.

Fig. 5

Theoretical 13C NMR spectrum of (Z)-1-[4-(Trifluoromethyl)benzylidene]thiosemicarbazide.

Fig. 3

Correlation graphic between experimental and theoretical FTIR of (Z)-1-[4-(Trifluoromethyl) benzylidene]thiosemicarbazide.

Fig. 6

Correlation graphic of experimental and calculated 13C NMR of (Z)-1-[4-(Trifluoromethyl) benzylidene]thiosemicarbazide.

Fig. 7

Molecular Electrostatic Potential (MEP) surface diagram of (Z)-1-[4-(Trifluoromethyl)benzylidene] thiosemicarbazide.

Fig. 8

The Highest Occupied Molecular Orbital – Lowest Unoccupied Molecular Orbital (HOMO – LUMO) and energy gap (Egap) for the (Z)-1-[4-(Trifluoromethyl)benzylidene]thiosemicarbazide (In ground state) (isovalue = 0.02).

Table 1

Calculated EHOMO, ELUMO, Egap, Electronegativity (χ), Chemical hardness (η) and softness (S) of (Z)-1-[4-(Trifluoromethyl)benzylidene]thiosemicarbazide.

EHOMO (eV)ELUMO (eV)Egap (eV)η (eV)σ (eV)χ (eV)
−8.60701.37787.22953.61460.2767−3.6146
Experimental FTIR spectrum of (Z)-1-[4-(Trifluoromethyl)benzylidene]thiosemicarbazide. Theoretical FTIR spectrum of (Z)-1-[4-(Trifluoromethyl)benzylidene]thiosemicarbazide (Zero-point vibrational energy = 453.584 kJ/Mol). Correlation graphic between experimental and theoretical FTIR of (Z)-1-[4-(Trifluoromethyl) benzylidene]thiosemicarbazide. Experimental 13C NMR spectrum of (Z)-1-[4-(Trifluoromethyl)benzylidene]thiosemicarbazide. Theoretical 13C NMR spectrum of (Z)-1-[4-(Trifluoromethyl)benzylidene]thiosemicarbazide. Correlation graphic of experimental and calculated 13C NMR of (Z)-1-[4-(Trifluoromethyl) benzylidene]thiosemicarbazide. Molecular Electrostatic Potential (MEP) surface diagram of (Z)-1-[4-(Trifluoromethyl)benzylidene] thiosemicarbazide. The Highest Occupied Molecular Orbital – Lowest Unoccupied Molecular Orbital (HOMO – LUMO) and energy gap (Egap) for the (Z)-1-[4-(Trifluoromethyl)benzylidene]thiosemicarbazide (In ground state) (isovalue = 0.02). Calculated EHOMO, ELUMO, Egap, Electronegativity (χ), Chemical hardness (η) and softness (S) of (Z)-1-[4-(Trifluoromethyl)benzylidene]thiosemicarbazide.

Experimental design, materials, and methods

Material

All chemicals and solvents were of analytical grade and were used as supplied.

Preparation of (Z)-1-[4-trifluoromethyl)benzylidene]thiosemicarbazide

A suspension of thiosemicarbazide (0.910 g, 0.01 mol) with 4-(trifluoromethyl)-benzaldehyde (1.740 g, 0.01 mol) was refluxed in ethanol (50 ml) for 5 hours. The white precipitate formed was filtered off and washed with cold ethanol. Finally, the precipitate recrystallized from hot ethanol, dried and kept in desiccator with silica gel.

Computational details

Optimized structure of (Z)-1-[4-trifluoromethyl)benzylidene]thiosemicarbazide was done with GaussView 5.0.9 and Gaussian 09 software package programme [5]. In theoretical studies, 6-311G (d,p) was selected as basic set due to standard theory level for C, H, N, S and F elements. Furthermore, the Density Functional Theory (DFT) method, named Becke, 3-parameter, Lee-Yang-Parr (B3LYP) was selected as method for studied their theoretical FTIR, 13C NMR, Molecular Electrostatic Potential (MEP), Highest Occupied Molecular Orbital (HOMO) and Lowest Unoccupied Molecular Orbital (LUMO) analysis in its optimized structure [6, 7]. Structure optimization was done at the minimum potential energy. Thus, all theoretical parameters were calculated at the minimum energy optimization. MEP is useful to visualize variably charged regions of a (Z)-1-[4-trifluoromethyl)benzylidene] thiosemicarbazide molecule. Hence, the charge distributions can give the information about how the molecules interact with other molecules. In addition, determination the sites for electrophilic attack and nucleophilic reaction could be identified. Thus, the electrophilic reactivity is shown by the yellow regions and nucleophilic reactivity is shown by the blue region. HOMO-LUMO determination and its several important key factors for conductivity activity which are the energy gap (ΔEgap), hardness (η), softness (σ) and the global electronegativity (χ) were calculated by using Eqs. (1), (2), (3), (4) as similar equation as reported, previously [4].

Specifications Table

SubjectChemistry
Specific subject areaSynthetic chemistry, spectroscopy
Type of dataTableImageFigure
How data were acquiredFTIR equipment Bruker Invenio S; NMR equipment Bruker Avance II 400 MHz; All theoretical computational data were obtained through GaussView 5.0.9 and Gaussian 09 software.
Data formatRawAnalysed
Parameters for data collectionThe FTIR and13C NMR spectrum were recorded at room temperature. Theoretical computational data was carried out through 6-311G (d,p) basic set with B3LYP DFT method.
Description of data collectionThe FTIR spectrum was recorded in range of 4000–400 cm−1 using ATR sampling technique. Sample was dissolved in deuterated dimethyl sulfoxide (d6-DMSO) to obtain13C NMR spectra. The GaussView 5.0.9 and Gaussian 09 software were carried out using typical personal computer.
Data source locationUniversiti Malaysia Terengganu, 21030 Kuala Nerus, Terengganu, Malaysia
Data accessibilityData is available with this article and in the Cambridge Crystallographic Data Centre (CCDC: 1507979)
Related research articleU. M. Osman, A. N. Farizal, S. Arshad, M. A. Kadir.Crystal Structure of (Z)-1-[4-Trifluoromethyl)benzylidene] thiosemicarbazide.X-Ray Structure Analysis Online journal, 33 (2017) 3–4. https://doi.org/10.2116/xraystruct.33.3.
Value of the Data

The mentioned data is useful to synthetic researchers who developing chemical database that specifically related with synthesizing thiomisecarbazide derivatives.

The details in the experimental and theoretical computational data is important to produce thiosemicarbazide derivatives for potential used in polymer electrolytes.

The data obtained from IR and13C NMR spectroscopic methods are important in structure elucidation of presence molecule.

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