| Literature DB >> 31718641 |
Wenjiao Cao1, Wuyuan Gao1, Panchan Zheng1, Xiao Sun1, Lihua Wang2,3,4,5.
Abstract
BACKGROUND: Progestin is effective to promote endometrial cancer (EC) cells apoptosis, however, continuous progestin administration causes low level of progestin receptor B (PRB), further resulting in progestin resistance. Here, we performed microarray analysis on Ishikawa cells (PRB+) treated with medroxyprogesterone acetate (MPA) to explore the molecular mechanism underlying the inhibitory influence of MPA on PRB+ EC cells.Entities:
Keywords: CHOP; Endometrial cancer; Endoplasmic reticulum stress; Lnc-CETP-3; Medroxyprogesterone acetate
Mesh:
Substances:
Year: 2019 PMID: 31718641 PMCID: PMC6852953 DOI: 10.1186/s12920-019-0601-9
Source DB: PubMed Journal: BMC Med Genomics ISSN: 1755-8794 Impact factor: 3.063
The number of differentially expressed mRNA and lncRNA in Ishikawa cells treated with MPA compared with untreated cells
| Differentially expressed mRNAs | Differentially expressed lncRNAs | ||||
|---|---|---|---|---|---|
| Up | Down | Total | Up | Down | Total |
| 358 | 778 | 1136 | 292 | 655 | 947 |
Fig. 1Differentially expressed mRNAs in Ishikawa cells treated with MPA compared with untreated cells. a The Volcano plot. Red represents significantly up-regulated mRNAs, blue represents significantly down-regulated mRNAs. b The heat map. Left three column represent control cell samples, right three column represent cells treated with MPA. Each raw represents each mRNA. Red represents significantly up-regulated mRNAs, green represents significantly down-regulated mRNAs
Fig. 2Functional enrichment analysis based on differentially expressed mRNAs. a GO terms in relation to cellular component. b GO terms in relation to biological process. c GO terms in relation to molecular function. d KEGG pathway
The biological processes related to ER stress/unfolded protein response
| GO ID | term | |
|---|---|---|
| GO: 0030968 | endoplasmic reticulum unfolded protein response | 1.9E-06 |
| GO: 0006986 | response to unfolded protein | 0.00035 |
| GO: 0036498 | IRE-1mediated unfolded protein response | 0.00074 |
| GO: 0034976 | response to endoplasmic reticulum stress | 0.00026 |
The expression levels of mRNAs related to ER stress
| mRNA | Fold change | |
|---|---|---|
| CHOP | 35.37 | 0.013 |
| HERPUD1 | 11.97 | 0.008 |
| ATF6 | 2.092 | 0.035 |
| PPP1R15A | 2.603 | 0.007 |
Fig. 3Functional enrichment analysis based on differentially expressed lncRNAs. a GO terms in relation to cellular component. b GO terms in relation to biological process. c GO terms in relation to molecular function. d KEGG pathway
Fig. 4Co-expression network of CHOP, HERPUD1 and lncRNAs
Fig. 5Functional enrichment analysis based on mRNAs co-expressed with lnc-CETP-3. a GO terms in relation to cellular component. b GO terms in relation to biological process. c GO terms in relation to molecular function. d KEGG pathway
Fig. 6Real-time RT-PCR analysis. a Lnc-SLC-12A3–1 and lncATF3–3 were highly expressed in cells treated with MPA compared with untreated cells, whereas lncSAP130–1 was decreased, which were consistent with microarray data. b The expression of ER stress-related lncRNA lnc-CETP-3 in Ishikawa cells (PRB+) and KLE cells (PRB-). c The expression of ER stress-related gene CHOP in Ishikawa cells (PRB+) and KLE cells (PRB-). d The expression of ER stress-related gene HERPUD1 in Ishikawa cells (PRB+) and KLE cells