Literature DB >> 31713162

Next Generation Sequencing (NGS): A Revolutionary Technology in Pharmacogenomics and Personalized Medicine in Cancer.

Stefania Morganti1,2, Paolo Tarantino1,2, Emanuela Ferraro1,2, Paolo D'Amico1,2, Bruno Achutti Duso1,2, Giuseppe Curigliano3,4.   

Abstract

Following the completion of the Human Genome Project in 2003, research in oncology has progressively focused on the sequencing of cancer genomes, with the aim of better understanding the genetic basis of oncogenesis and identifying actionable alterations. The development of next-generation-sequencing (NGS) techniques, commercially available since 2006, allowed for a cost- and time-effective sequencing of tumor DNA, leading to a "genomic era" of cancer research and treatment. NGS provided a significant step forward in Personalized Medicine (PM) by enabling the detection of somatic driver mutations, resistance mechanisms, quantification of mutational burden, germline mutations which settled the foundation of a new approach in cancer care. In this chapter we discuss the history, available techniques and applications of NGS in oncology, with a particular referral to the PM approach and the emerging role of the research field of pharmacogenomics.

Entities:  

Keywords:  Genomic era; Homologous recombination; Liquid biopsy; Microsatellite instability; Next-generation-sequencing (NGS); Oncogenesis; Personalized medicine; Pharmacogenomics; RNA sequencing; Sequencing; Tumor mutational burden

Mesh:

Year:  2019        PMID: 31713162     DOI: 10.1007/978-3-030-24100-1_2

Source DB:  PubMed          Journal:  Adv Exp Med Biol        ISSN: 0065-2598            Impact factor:   2.622


  28 in total

1.  Mechanistic Translation of Melanoma Genetic Landscape in Enriched Pathways and Oncogenic Protein-Protein Interactions.

Authors:  Michele Massimino; Stefania Stella; Giovanni Micale; Lucia Motta; Giuliana Pavone; Giuseppe Broggi; Eliana Piombino; Gaetano Magro; Hector Jose Soto Parra; Livia Manzella; Paolo Vigneri
Journal:  Cancer Genomics Proteomics       Date:  2022 May-Jun       Impact factor: 4.069

Review 2.  Cancer Risk and Mutational Patterns Following Organ Transplantation.

Authors:  Yangyang Shen; Di Lian; Kai Shi; Yuefeng Gao; Xiaoxiang Hu; Kun Yu; Qian Zhao; Chungang Feng
Journal:  Front Cell Dev Biol       Date:  2022-06-28

Review 3.  Artificial Intelligence, Healthcare, Clinical Genomics, and Pharmacogenomics Approaches in Precision Medicine.

Authors:  Habiba Abdelhalim; Asude Berber; Mudassir Lodi; Rihi Jain; Achuth Nair; Anirudh Pappu; Kush Patel; Vignesh Venkat; Cynthia Venkatesan; Raghu Wable; Matthew Dinatale; Allyson Fu; Vikram Iyer; Ishan Kalove; Marc Kleyman; Joseph Koutsoutis; David Menna; Mayank Paliwal; Nishi Patel; Thirth Patel; Zara Rafique; Rothela Samadi; Roshan Varadhan; Shreyas Bolla; Sreya Vadapalli; Zeeshan Ahmed
Journal:  Front Genet       Date:  2022-07-06       Impact factor: 4.772

4.  Identification of a Novel Four-Gene Signature Correlated With the Prognosis of Patients With Hepatocellular Carcinoma: A Comprehensive Analysis.

Authors:  Weihua Zhu; Lixin Ru; Zhenchao Ma
Journal:  Front Oncol       Date:  2021-03-12       Impact factor: 6.244

Review 5.  Drug Repurposing in Cancer Therapy: Influence of Patient's Genetic Background in Breast Cancer Treatment.

Authors:  Rafaela Rodrigues; Diana Duarte; Nuno Vale
Journal:  Int J Mol Sci       Date:  2022-04-14       Impact factor: 6.208

6.  Identification of candidate genes and prognostic value analysis in patients with PDL1-positive and PDL1-negative lung adenocarcinoma.

Authors:  Xiaoguang Qi; Chunyan Qi; Xindan Kang; Yi Hu; Weidong Han
Journal:  PeerJ       Date:  2020-06-17       Impact factor: 2.984

7.  Increased usability, algorithmic improvements and incorporation of data mining for structure calculation of proteins with REDCRAFT software package.

Authors:  Casey Cole; Caleb Parks; Julian Rachele; Homayoun Valafar
Journal:  BMC Bioinformatics       Date:  2020-12-03       Impact factor: 3.169

Review 8.  Precision Medicine in Osteosarcoma: MATCH Trial and Beyond.

Authors:  Elisa Tirtei; Anna Campello; Sebastian D Asaftei; Katia Mareschi; Matteo Cereda; Franca Fagioli
Journal:  Cells       Date:  2021-01-31       Impact factor: 6.600

9.  Evaluation of Somatic Mutations in Solid Metastatic Pan-Cancer Patients.

Authors:  Moom R Roosan; Isa Mambetsariev; Rebecca Pharaon; Jeremy Fricke; Angel R Baroz; Joseph Chao; Chen Chen; Mohd W Nasser; Ramakanth Chirravuri-Venkata; Maneesh Jain; Lynette Smith; Susan E Yost; Karen L Reckamp; Raju Pillai; Leonidas Arvanitis; Michelle Afkhami; Edward W Wang; Vincent Chung; Mihaela Cristea; Marwan Fakih; Marianna Koczywas; Erminia Massarelli; Joanne Mortimer; Yuan Yuan; Surinder K Batra; Sumanta Pal; Ravi Salgia
Journal:  Cancers (Basel)       Date:  2021-06-03       Impact factor: 6.639

10.  Whole-exome sequencing reveals potential mechanisms of drug resistance to FGFR3-TACC3 targeted therapy and subsequent drug selection: towards a personalized medicine.

Authors:  Zhou Tong; Cong Yan; Yu-An Dong; Ming Yao; Hangyu Zhang; Lulu Liu; Yi Zheng; Peng Zhao; Yimin Wang; Weijia Fang; Feifei Zhang; Weiqin Jiang
Journal:  BMC Med Genomics       Date:  2020-09-21       Impact factor: 3.063

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.