Literature DB >> 31710732

Rational De Novo Design of a Cu Metalloenzyme for Superoxide Dismutation.

Emilie Mathieu1, Audrey E Tolbert2, Karl J Koebke2, Cédric Tard3, Olga Iranzo4, James E Penner-Hahn2, Clotilde Policar1, Vincent Pecoraro2.   

Abstract

Superoxide dismutases (SODs) are highly efficient enzymes for superoxide dismutation and the first line of defense against oxidative stress. These metalloproteins contain a redox-active metal ion in their active site (Mn, Cu, Fe, Ni) with a tightly controlled reduction potential found in a close range around the optimal value of 0.36 V versus the normal hydrogen electrode (NHE). Rationally designed proteins with well-defined three-dimensional structures offer new opportunities for obtaining functional SOD mimics. Here, we explore four different copper-binding scaffolds: H3 (His3 ), H4 (His4 ), H2 DH (His3 Asp with two His and one Asp in the same plane) and H3 D (His3 Asp with three His in the same plane) by using the scaffold of the de novo protein GRα3 D. EPR and XAS analysis of the resulting copper complexes demonstrates that they are good CuII -bound structural mimics of Cu-only SODs. Furthermore, all the complexes exhibit SOD activity, though three orders of magnitude slower than the native enzyme, making them the first de novo copper SOD mimics.
© 2020 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  bioinorganic chemistry; enzymes; metalloenzymes; metalloproteins; protein design

Mesh:

Substances:

Year:  2019        PMID: 31710732      PMCID: PMC6944188          DOI: 10.1002/chem.201903808

Source DB:  PubMed          Journal:  Chemistry        ISSN: 0947-6539            Impact factor:   5.236


  71 in total

Review 1.  Superoxide dismutase mimetics.

Authors:  Daniela Salvemini; Carolina Muscoli; Dennis P Riley; Salvatore Cuzzocrea
Journal:  Pulm Pharmacol Ther       Date:  2002       Impact factor: 3.410

2.  Disease-associated mutations at copper ligand histidine residues of superoxide dismutase 1 diminish the binding of copper and compromise dimer stability.

Authors:  Jiou Wang; Amy Caruano-Yzermans; Angela Rodriguez; Jonathan P Scheurmann; Hilda H Slunt; Xiaohang Cao; Jonathan Gitlin; P John Hart; David R Borchelt
Journal:  J Biol Chem       Date:  2006-11-08       Impact factor: 5.157

Review 3.  Copper active sites in biology.

Authors:  Edward I Solomon; David E Heppner; Esther M Johnston; Jake W Ginsbach; Jordi Cirera; Munzarin Qayyum; Matthew T Kieber-Emmons; Christian H Kjaergaard; Ryan G Hadt; Li Tian
Journal:  Chem Rev       Date:  2014-03-03       Impact factor: 60.622

Review 4.  The coming of age of de novo protein design.

Authors:  Po-Ssu Huang; Scott E Boyken; David Baker
Journal:  Nature       Date:  2016-09-15       Impact factor: 49.962

5.  Superoxide dismutase: a comparison of rate constants.

Authors:  H J Forman; I Fridovich
Journal:  Arch Biochem Biophys       Date:  1973-09       Impact factor: 4.013

6.  Superoxide dismutase. An enzymic function for erythrocuprein (hemocuprein).

Authors:  J M McCord; I Fridovich
Journal:  J Biol Chem       Date:  1969-11-25       Impact factor: 5.157

Review 7.  Eukaryotic copper-only superoxide dismutases (SODs): A new class of SOD enzymes and SOD-like protein domains.

Authors:  Natalie G Robinett; Ryan L Peterson; Valeria C Culotta
Journal:  J Biol Chem       Date:  2017-12-19       Impact factor: 5.157

8.  Manganese(III) biliverdin IX dimethyl ester: a powerful catalytic scavenger of superoxide employing the Mn(III)/Mn(IV) redox couple.

Authors:  I Spasojević; I Batinić-Haberle; R D Stevens; P Hambright; A N Thorpe; J Grodkowski; P Neta; I Fridovich
Journal:  Inorg Chem       Date:  2001-02-12       Impact factor: 5.165

9.  Candida albicans SOD5 represents the prototype of an unprecedented class of Cu-only superoxide dismutases required for pathogen defense.

Authors:  Julie E Gleason; Ahmad Galaleldeen; Ryan L Peterson; Alexander B Taylor; Stephen P Holloway; Jessica Waninger-Saroni; Brendan P Cormack; Diane E Cabelli; P John Hart; Valeria Cizewski Culotta
Journal:  Proc Natl Acad Sci U S A       Date:  2014-04-07       Impact factor: 11.205

10.  Nickel superoxide dismutase structure and mechanism.

Authors:  David P Barondeau; Carey J Kassmann; Cami K Bruns; John A Tainer; Elizabeth D Getzoff
Journal:  Biochemistry       Date:  2004-06-29       Impact factor: 3.162

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  3 in total

1.  Nitrite reductase activity within an antiparallel de novo scaffold.

Authors:  Karl J Koebke; Alison G Tebo; Elizabeth C Manickas; Aniruddha Deb; James E Penner-Hahn; Vincent L Pecoraro
Journal:  J Biol Inorg Chem       Date:  2021-09-06       Impact factor: 3.358

2.  De Novo Design of a Self-Assembled Artificial Copper Peptide that Activates and Reduces Peroxide.

Authors:  Suchitra Mitra; Divyansh Prakash; Khashayar Rajabimoghadam; Zdzislaw Wawrzak; Pallavi Prasad; Tong Wu; Sandeep K Misra; Joshua S Sharp; Isaac Garcia-Bosch; Saumen Chakraborty
Journal:  ACS Catal       Date:  2021-08-03       Impact factor: 13.700

3.  Inertness of Superoxide Dismutase Mimics Mn(II) Complexes Based on an Open-Chain Ligand, Bioactivity, and Detection in Intestinal Epithelial Cells.

Authors:  Gabrielle Schanne; Martha Zoumpoulaki; Géraldine Gazzah; Amandine Vincent; Hugues Preud'homme; Ryszard Lobinski; Sylvie Demignot; Philippe Seksik; Nicolas Delsuc; Clotilde Policar
Journal:  Oxid Med Cell Longev       Date:  2022-04-01       Impact factor: 6.543

  3 in total

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