| Literature DB >> 31709105 |
T N Sanjeeva Murthy1, C S Chidan Kumar2, S Naveen3, M K Veeraiah4, Kakarla Raghava Reddy5, Ismail Warad6.
Abstract
2-(4-Nitro-phen-yl)-2-oxoethyl picolinate, C14H10N2O5, was synthesized under mild conditions. The chemical and mol-ecular structures were confirmed by single-crystal X-ray diffraction analysis. The mol-ecules are linked by inversion into centrosymmetric dimers via weak inter-molecular C-H⋯O inter-actions, forming R 2 2(10) ring motifs, and further strengthened by weak π-π inter-actions. Hirshfeld surface analyses, the d norm surfaces, electrostatic potential and two-dimensional fingerprint (FP) plots were used to verify the contributions of the different inter-molecular inter-actions within the supra-molecular structure. The shape-index surface shows that two sides of the mol-ecules are involved with the same contacts in neighbouring mol-ecules and curvedness plots show flat surface patches that are characteristic of planar stacking. © Sanjeeva Murthy et al. 2019.Entities:
Keywords: Hirshfeld surface analysis; R_{2}^{2}(10) ring motif; crystal structure; intermoleculsr interactions
Year: 2019 PMID: 31709105 PMCID: PMC6829725 DOI: 10.1107/S2056989019014105
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of the title compound, indicating the atom-numbering scheme and with displacement ellipsoids drawn at the 50% probability level.
Selected geometric parameters (Å, °)
| O1—C8 | 1.4329 (17) | O5—N1 | 1.211 (2) |
| O1—C9 | 1.3374 (16) | N1—C3 | 1.4761 (19) |
| O2—C7 | 1.2021 (18) | N2—C10 | 1.3372 (18) |
| O3—C9 | 1.1969 (17) | N2—C11 | 1.339 (2) |
| O4—N1 | 1.205 (2) | ||
| C8—O1—C9 | 116.39 (10) | O2—C7—C8 | 121.71 (13) |
| O4—N1—O5 | 123.38 (16) | O1—C8—C7 | 108.11 (11) |
| O4—N1—C3 | 118.83 (14) | O1—C9—O3 | 123.96 (13) |
| O5—N1—C3 | 117.79 (15) | O1—C9—C10 | 111.08 (11) |
| C10—N2—C11 | 115.93 (13) | O3—C9—C10 | 124.96 (12) |
| N1—C3—C2 | 118.29 (14) | N2—C10—C9 | 114.56 (12) |
| N1—C3—C4 | 118.83 (13) | N2—C10—C14 | 124.07 (13) |
| O2—C7—C6 | 120.57 (13) | N2—C11—C12 | 123.99 (16) |
Figure 2A view of two molecules of the title compound linked by inversion into centrosymmetric dimers by weak C8—H8B⋯O3 intermolecular interactions forming an (10) ring motif. [See Note 1]
Hydrogen-bond geometry (Å, °)
Cg1 and Cg2 are the centroids of the pyridine and nitrophenyl rings, respectively.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C5—H5 | 0.93 | 2.55 | 3.2283 (18) | 130 |
| C8—H8 | 0.97 | 2.45 | 3.2681 (17) | 141 |
| C12—H12 | 0.93 | 2.52 | 3.396 (3) | 157 |
| C13—H13 | 0.93 | 2.47 | 3.277 (2) | 146 |
| C9—O3⋯ | 3.35 (1) | 3.4735 (16) | 86 (1) | |
| C7—O2⋯ | 3.58 (1) | 3.8788 (15) | 67 (1) | |
| N1—O4⋯ | 3.76 (1) | 3.5479 (16) | 71 (1) | |
| N1—O5⋯ | 3.68 (1) | 3.5479 (16) | 74 (1) |
Symmetry codes: (i) ; (ii) ; (iii) .
Figure 3The packing of molecules of the title compound in the ab plane, viewed along the c axis. Cyan dashed lines indicate weak intermolecular C—H⋯O interactions forming (10) ring motifs.
Figure 4A view of the three-dimensional Hirshfeld surface of the title compound mapped over d norm.
Figure 5Hirshfeld surface of the title compound mapped with shape-index and curvedness.
Figure 6Two-dimensional fingerprint plots of the title compound, showing the percentage contributions of all interactions, and the individual types of interactions.
Figure 7Packing of the molecules when viewed down along the a axis. The dashed lines represent C—H⋯O hydrogen bonds.
Experimental details
| Crystal data | |
| Chemical formula | C14H10N2O5 |
|
| 286.24 |
| Crystal system, space group | Triclinic, |
| Temperature (K) | 297 |
|
| 4.6292 (4), 10.6563 (9), 13.3592 (11) |
| α, β, γ (°) | 99.136 (1), 93.426 (1), 100.556 (1) |
|
| 636.95 (9) |
|
| 2 |
| Radiation type | Mo |
| μ (mm−1) | 0.12 |
| Crystal size (mm) | 0.41 × 0.27 × 0.16 |
| Data collection | |
| Diffractometer | Bruker APEXII DUO CCD area-detector |
| Absorption correction | Multi-scan ( |
|
| 0.953, 0.981 |
| No. of measured, independent and observed [ | 21701, 3496, 2571 |
|
| 0.022 |
| (sin θ/λ)max (Å−1) | 0.690 |
| Refinement | |
|
| 0.046, 0.136, 1.07 |
| No. of reflections | 3496 |
| No. of parameters | 190 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.24, −0.19 |
Computer programs: APEX2 (Bruker, 2012 ▸), SAINT (Bruker, 2012 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL97 (Sheldrick, 2008 ▸), Mercury (Macrae et al., 2008 ▸), SHELXL2015 (Sheldrick, 2015 ▸) and PLATON (Spek, 2009 ▸).
| C14H10N2O5 | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 2571 reflections | |
| θ = 1.6–29.4° | |
| µ = 0.12 mm−1 | |
| α = 99.136 (1)° | |
| β = 93.426 (1)° | Rectangle, white |
| γ = 100.556 (1)° | 0.41 × 0.27 × 0.16 mm |
| Bruker APEXII DUO CCD area-detector diffractometer | 3496 independent reflections |
| Radiation source: fine-focus sealed tube | 2571 reflections with |
| Graphite monochromator | |
| Detector resolution: 18.4 pixels mm-1 | θmax = 29.4°, θmin = 1.6° |
| φ and ω scans | |
| Absorption correction: multi-scan (SADABS; Bruker, 2012) | |
| 21701 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3496 reflections | (Δ/σ)max < 0.001 |
| 190 parameters | Δρmax = 0.24 e Å−3 |
| 0 restraints | Δρmin = −0.18 e Å−3 |
| Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles |
| Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > 2sigma(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger. |
| O1 | 0.5089 (2) | 0.21852 (9) | 0.04455 (7) | 0.0528 (3) | |
| O2 | 0.3481 (3) | 0.40340 (11) | 0.16679 (10) | 0.0824 (5) | |
| O3 | 0.2932 (2) | 0.05168 (10) | −0.07629 (8) | 0.0578 (3) | |
| O4 | −0.6315 (3) | 0.13249 (15) | 0.50999 (11) | 0.0961 (6) | |
| O5 | −0.5484 (4) | 0.33778 (16) | 0.55148 (12) | 0.1149 (7) | |
| N1 | −0.5128 (3) | 0.23923 (15) | 0.49895 (10) | 0.0653 (5) | |
| N2 | 0.7107 (3) | 0.12934 (12) | −0.20395 (9) | 0.0563 (4) | |
| C1 | −0.0180 (4) | 0.38578 (14) | 0.32225 (12) | 0.0581 (5) | |
| C2 | −0.2018 (4) | 0.37345 (15) | 0.39938 (12) | 0.0614 (5) | |
| C3 | −0.3152 (3) | 0.25177 (14) | 0.41686 (10) | 0.0493 (4) | |
| C4 | −0.2565 (3) | 0.14168 (14) | 0.36073 (11) | 0.0547 (4) | |
| C5 | −0.0737 (3) | 0.15511 (13) | 0.28293 (11) | 0.0512 (4) | |
| C6 | 0.0465 (3) | 0.27660 (12) | 0.26370 (9) | 0.0426 (3) | |
| C7 | 0.2433 (3) | 0.29607 (13) | 0.17993 (10) | 0.0466 (4) | |
| C8 | 0.2962 (3) | 0.17779 (13) | 0.11235 (10) | 0.0491 (4) | |
| C9 | 0.4795 (3) | 0.14691 (12) | −0.04857 (10) | 0.0435 (4) | |
| C10 | 0.7087 (3) | 0.20214 (12) | −0.11282 (10) | 0.0442 (4) | |
| C11 | 0.9099 (4) | 0.17721 (17) | −0.26372 (13) | 0.0659 (6) | |
| C12 | 1.1060 (4) | 0.29307 (18) | −0.23613 (14) | 0.0707 (6) | |
| C13 | 1.1009 (4) | 0.36515 (16) | −0.14264 (14) | 0.0675 (5) | |
| C14 | 0.8961 (3) | 0.31902 (13) | −0.07891 (12) | 0.0536 (4) | |
| H1A | 0.06280 | 0.46770 | 0.30960 | 0.0700* | |
| H2A | −0.24750 | 0.44630 | 0.43860 | 0.0740* | |
| H4A | −0.33680 | 0.06020 | 0.37440 | 0.0660* | |
| H5A | −0.03160 | 0.08170 | 0.24340 | 0.0610* | |
| H8A | 0.36960 | 0.12060 | 0.15300 | 0.0590* | |
| H8B | 0.11330 | 0.13120 | 0.07380 | 0.0590* | |
| H11A | 0.91590 | 0.12910 | −0.32780 | 0.0790* | |
| H12A | 1.24020 | 0.32180 | −0.28060 | 0.0850* | |
| H13A | 1.23200 | 0.44370 | −0.12200 | 0.0810* | |
| H14A | 0.88590 | 0.36610 | −0.01480 | 0.0640* |
| O1 | 0.0520 (5) | 0.0536 (5) | 0.0472 (5) | −0.0055 (4) | 0.0231 (4) | 0.0038 (4) |
| O2 | 0.1022 (9) | 0.0475 (6) | 0.0962 (9) | −0.0035 (6) | 0.0567 (8) | 0.0123 (6) |
| O3 | 0.0560 (6) | 0.0544 (6) | 0.0562 (6) | −0.0052 (4) | 0.0168 (4) | 0.0034 (4) |
| O4 | 0.1105 (11) | 0.0952 (10) | 0.0910 (10) | 0.0128 (8) | 0.0615 (9) | 0.0306 (8) |
| O5 | 0.1705 (16) | 0.0994 (11) | 0.0930 (10) | 0.0483 (11) | 0.0884 (11) | 0.0174 (9) |
| N1 | 0.0719 (8) | 0.0818 (10) | 0.0506 (7) | 0.0243 (7) | 0.0280 (6) | 0.0176 (7) |
| N2 | 0.0651 (7) | 0.0588 (7) | 0.0479 (6) | 0.0142 (6) | 0.0207 (5) | 0.0096 (5) |
| C1 | 0.0717 (9) | 0.0420 (7) | 0.0613 (9) | 0.0079 (6) | 0.0242 (7) | 0.0080 (6) |
| C2 | 0.0757 (10) | 0.0527 (8) | 0.0587 (9) | 0.0193 (7) | 0.0263 (7) | 0.0035 (7) |
| C3 | 0.0501 (7) | 0.0608 (8) | 0.0394 (6) | 0.0129 (6) | 0.0150 (5) | 0.0098 (6) |
| C4 | 0.0638 (8) | 0.0489 (7) | 0.0510 (7) | 0.0032 (6) | 0.0225 (6) | 0.0102 (6) |
| C5 | 0.0617 (8) | 0.0416 (7) | 0.0489 (7) | 0.0045 (6) | 0.0223 (6) | 0.0035 (5) |
| C6 | 0.0424 (6) | 0.0427 (6) | 0.0412 (6) | 0.0037 (5) | 0.0103 (5) | 0.0057 (5) |
| C7 | 0.0451 (6) | 0.0453 (7) | 0.0479 (7) | 0.0010 (5) | 0.0143 (5) | 0.0089 (5) |
| C8 | 0.0500 (7) | 0.0483 (7) | 0.0478 (7) | 0.0002 (5) | 0.0222 (5) | 0.0087 (5) |
| C9 | 0.0437 (6) | 0.0432 (6) | 0.0456 (7) | 0.0082 (5) | 0.0143 (5) | 0.0102 (5) |
| C10 | 0.0461 (6) | 0.0452 (6) | 0.0455 (7) | 0.0116 (5) | 0.0175 (5) | 0.0126 (5) |
| C11 | 0.0812 (11) | 0.0742 (10) | 0.0521 (8) | 0.0272 (9) | 0.0313 (8) | 0.0170 (7) |
| C12 | 0.0771 (10) | 0.0764 (11) | 0.0763 (11) | 0.0270 (9) | 0.0479 (9) | 0.0368 (9) |
| C13 | 0.0670 (9) | 0.0548 (8) | 0.0852 (11) | 0.0043 (7) | 0.0367 (8) | 0.0236 (8) |
| C14 | 0.0573 (8) | 0.0468 (7) | 0.0581 (8) | 0.0057 (6) | 0.0256 (6) | 0.0107 (6) |
| O1—C8 | 1.4329 (17) | C7—C8 | 1.4973 (19) |
| O1—C9 | 1.3374 (16) | C9—C10 | 1.4998 (19) |
| O2—C7 | 1.2021 (18) | C10—C14 | 1.3737 (19) |
| O3—C9 | 1.1969 (17) | C11—C12 | 1.375 (3) |
| O4—N1 | 1.205 (2) | C12—C13 | 1.362 (3) |
| O5—N1 | 1.211 (2) | C13—C14 | 1.387 (2) |
| N1—C3 | 1.4761 (19) | C1—H1A | 0.9300 |
| N2—C10 | 1.3372 (18) | C2—H2A | 0.9300 |
| N2—C11 | 1.339 (2) | C4—H4A | 0.9300 |
| C1—C2 | 1.382 (2) | C5—H5A | 0.9300 |
| C1—C6 | 1.386 (2) | C8—H8A | 0.9700 |
| C2—C3 | 1.369 (2) | C8—H8B | 0.9700 |
| C3—C4 | 1.369 (2) | C11—H11A | 0.9300 |
| C4—C5 | 1.387 (2) | C12—H12A | 0.9300 |
| C5—C6 | 1.3822 (19) | C13—H13A | 0.9300 |
| C6—C7 | 1.5006 (19) | C14—H14A | 0.9300 |
| C8—O1—C9 | 116.39 (10) | N2—C11—C12 | 123.99 (16) |
| O4—N1—O5 | 123.38 (16) | C11—C12—C13 | 119.00 (17) |
| O4—N1—C3 | 118.83 (14) | C12—C13—C14 | 118.62 (16) |
| O5—N1—C3 | 117.79 (15) | C10—C14—C13 | 118.39 (14) |
| C10—N2—C11 | 115.93 (13) | C2—C1—H1A | 120.00 |
| C2—C1—C6 | 120.27 (14) | C6—C1—H1A | 120.00 |
| C1—C2—C3 | 118.56 (14) | C1—C2—H2A | 121.00 |
| N1—C3—C2 | 118.29 (14) | C3—C2—H2A | 121.00 |
| N1—C3—C4 | 118.83 (13) | C3—C4—H4A | 121.00 |
| C2—C3—C4 | 122.88 (14) | C5—C4—H4A | 121.00 |
| C3—C4—C5 | 118.09 (13) | C4—C5—H5A | 120.00 |
| C4—C5—C6 | 120.56 (13) | C6—C5—H5A | 120.00 |
| C1—C6—C5 | 119.64 (13) | O1—C8—H8A | 110.00 |
| C1—C6—C7 | 117.81 (12) | O1—C8—H8B | 110.00 |
| C5—C6—C7 | 122.54 (12) | C7—C8—H8A | 110.00 |
| O2—C7—C6 | 120.57 (13) | C7—C8—H8B | 110.00 |
| O2—C7—C8 | 121.71 (13) | H8A—C8—H8B | 108.00 |
| C6—C7—C8 | 117.70 (12) | N2—C11—H11A | 118.00 |
| O1—C8—C7 | 108.11 (11) | C12—C11—H11A | 118.00 |
| O1—C9—O3 | 123.96 (13) | C11—C12—H12A | 120.00 |
| O1—C9—C10 | 111.08 (11) | C13—C12—H12A | 121.00 |
| O3—C9—C10 | 124.96 (12) | C12—C13—H13A | 121.00 |
| N2—C10—C9 | 114.56 (12) | C14—C13—H13A | 121.00 |
| N2—C10—C14 | 124.07 (13) | C10—C14—H14A | 121.00 |
| C9—C10—C14 | 121.36 (12) | C13—C14—H14A | 121.00 |
| C9—O1—C8—C7 | −147.02 (11) | C4—C5—C6—C1 | −0.5 (2) |
| C8—O1—C9—O3 | −1.63 (19) | C4—C5—C6—C7 | −179.49 (13) |
| C8—O1—C9—C10 | 178.12 (11) | C1—C6—C7—O2 | 2.4 (2) |
| O4—N1—C3—C2 | 174.45 (15) | C1—C6—C7—C8 | −175.97 (13) |
| O4—N1—C3—C4 | −4.7 (2) | C5—C6—C7—O2 | −178.60 (14) |
| O5—N1—C3—C2 | −5.1 (2) | C5—C6—C7—C8 | 3.1 (2) |
| O5—N1—C3—C4 | 175.83 (15) | O2—C7—C8—O1 | 6.80 (19) |
| C11—N2—C10—C9 | 178.95 (13) | C6—C7—C8—O1 | −174.90 (11) |
| C11—N2—C10—C14 | −0.4 (2) | O1—C9—C10—N2 | 174.17 (12) |
| C10—N2—C11—C12 | 0.4 (3) | O1—C9—C10—C14 | −6.46 (18) |
| C6—C1—C2—C3 | 0.6 (3) | O3—C9—C10—N2 | −6.1 (2) |
| C2—C1—C6—C5 | −0.1 (2) | O3—C9—C10—C14 | 173.28 (14) |
| C2—C1—C6—C7 | 178.99 (15) | N2—C10—C14—C13 | 0.0 (2) |
| C1—C2—C3—N1 | −179.64 (15) | C9—C10—C14—C13 | −179.32 (14) |
| C1—C2—C3—C4 | −0.6 (2) | N2—C11—C12—C13 | −0.1 (3) |
| N1—C3—C4—C5 | 179.10 (13) | C11—C12—C13—C14 | −0.4 (3) |
| C2—C3—C4—C5 | 0.0 (2) | C12—C13—C14—C10 | 0.4 (2) |
| C3—C4—C5—C6 | 0.5 (2) |
| H··· | ||||
| C5—H5 | 0.93 | 2.55 | 3.2283 (18) | 130 |
| C8—H8 | 0.97 | 2.45 | 3.2681 (17) | 141 |
| C12—H12 | 0.93 | 2.52 | 3.396 (3) | 157 |
| C13—H13 | 0.93 | 2.47 | 3.277 (2) | 146 |
| C9—O3··· | 3.35 (1) | 3.4735 (16) | 86 (1) | |
| C7—O2··· | 3.58 (1) | 3.8788 (15) | 67 (1) | |
| N1—O4··· | 3.76 (1) | 3.5479 (16) | 71 (1) | |
| N1—O5··· | 3.68 (1) | 3.5479 (16) | 74 (1) |