| Literature DB >> 31709104 |
Nathalie Saffon-Merceron1, Alain Vigroux1, Pascal Hoffmann1.
Abstract
A zinc metal-organic framework, namely poly[bis-(N,N-di-ethyl-formamide)(μ4-naphthalene-2,6-di-carboxyl-ato)(μ2-naphthalene-2,6-di-carboxyl-ato)dizinc(II)], [Zn(C12H6O4)(C15H11NO)] n , built from windmill-type secondary building units and forming zigzag shaped two-dimensional stacked layers, has been solvothermally synthesized from naphthalene-2,6-di-carb-oxy-lic acid and zinc(II) acetate as the metal source in N,N-di-ethyl-formamide containing small amounts of formic acid. © Saffon-Merceron et al. 2019.Entities:
Keywords: N,N-diethylformamide; crystal structure; metal–organic framework; naphthalenedicarboxylic acid; zinc carboxylates
Year: 2019 PMID: 31709104 PMCID: PMC6829708 DOI: 10.1107/S2056989019014142
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The structural model of the zinc windmill (or pw2) SBU found in MOF 1 (left) and of a typical zinc four-blade paddlewheel (pw4) cluster (right).
Figure 2The molecular structure of MOF 1, with displacement ellipsoids drawn at the 50% probability level, showing the labelling sheme and the disordered ethyl group of DEF. [Symmetry codes: (i) −x + 1, −y − 1, −z + 1; (ii) x + 1, y − 1, z; (iii) −x − 1, −y, −z + 2; (iv) x − 1, y, z + 1; (v) −x, −y, −z + 1.]
Figure 3Hcentroid–π interaction found in MOF 1 with DEF H atoms (H16) located near the centroid of the NDC2− aromatic ring (all H atoms have been omitted for clarity, except for the DEF-H16 H atoms involved in the interactions).
Hydrogen-bond geometry (Å, °)
Cg1 and Cg2 are the centroids of the C2–C5/C5vii/C6vii and C5/C6/C2vii–C5vii rings, respectively.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C4—H4⋯O1iv | 0.95 | 2.39 | 3.307 (4) | 161 |
| C12—H12⋯O3v | 0.95 | 2.63 | 3.548 (4) | 156 |
| C16—H16⋯ | 0.95 | 2.99 | 3.520 (17) | 114 |
| C16—H16⋯ | 0.95 | 2.99 | 3.520 (17) | 114 |
Symmetry codes: (iv) ; (v) ; (vi) ; (vii) .
Figure 4View of the two-dimensional layers in MOF 1 stacked in a self-locking fashion yielding the three-dimensional supramolecular framework.
Figure 5View of the two-dimensional stacked layers in MOF 1 along the crystallographic (a) a, (b) b and (c) c axes.
Figure 6PXRD patterns (a) simulated from the single-crystal data of 1 and (b) measured from a sample of 1 prepared from 2,6-H2NDC and Zn(OAc)2 in DEF containing formic acid.
Experimental details
| Crystal data | |
| Chemical formula | [Zn(C12H6O4)(C15H11NO)] |
|
| 380.68 |
| Crystal system, space group | Triclinic, |
| Temperature (K) | 193 |
|
| 7.9134 (5), 8.3006 (5), 12.6413 (8) |
| α, β, γ (°) | 97.873 (4), 91.620 (4), 91.991 (5) |
|
| 821.57 (9) |
|
| 2 |
| Radiation type | Mo |
| μ (mm−1) | 1.52 |
| Crystal size (mm) | 0.10 × 0.04 × 0.04 |
| Data collection | |
| Diffractometer | Bruker SMART APEXII CCD area detector |
| Absorption correction | Multi-scan ( |
|
| 0.863, 0.942 |
| No. of measured, independent and observed [ | 13141, 3336, 2436 |
|
| 0.075 |
| (sin θ/λ)max (Å−1) | 0.625 |
| Refinement | |
|
| 0.042, 0.081, 1.00 |
| No. of reflections | 3336 |
| No. of parameters | 237 |
| No. of restraints | 41 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.33, −0.37 |
Computer programs: APEX2 (Bruker, 2008 ▸), SAINT (Bruker, 2008 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL2017 (Sheldrick, 2015 ▸), SHELXTL (Bruker, 2008 ▸) and publCIF (Westrip, 2010 ▸).
| [Zn(C12H6O4)(C15H11NO)] | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 1701 reflections | |
| θ = 2.5–21.5° | |
| µ = 1.52 mm−1 | |
| α = 97.873 (4)° | |
| β = 91.620 (4)° | Block, colourless |
| γ = 91.991 (5)° | 0.10 × 0.04 × 0.04 mm |
| Bruker SMART APEXII CCD area detector diffractometer | 3336 independent reflections |
| Radiation source: fine-focus selaed tube | 2436 reflections with |
| Detector resolution: 8.333 pixels mm-1 | |
| phi and ω scans | θmax = 26.4°, θmin = 2.8° |
| Absorption correction: multi-scan (SADABS; Bruker, 2008) | |
| 13141 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3336 reflections | (Δ/σ)max = 0.001 |
| 237 parameters | Δρmax = 0.33 e Å−3 |
| 41 restraints | Δρmin = −0.37 e Å−3 |
| 0 constraints |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Occ. (<1) | |||||
| Zn1 | 0.02528 (5) | 0.13460 (5) | 0.62683 (3) | 0.02329 (12) | |
| O1 | −0.0138 (3) | 0.0539 (3) | 0.8118 (2) | 0.0495 (7) | |
| O2 | −0.1959 (3) | 0.1010 (3) | 0.68613 (17) | 0.0311 (5) | |
| O3 | 0.0472 (2) | −0.1661 (2) | 0.52376 (16) | 0.0249 (5) | |
| O4 | 0.1080 (3) | 0.3581 (3) | 0.68413 (19) | 0.0376 (6) | |
| O5 | 0.2353 (2) | 0.0121 (2) | 0.60995 (16) | 0.0267 (5) | |
| C1 | −0.1604 (4) | 0.0679 (4) | 0.7800 (3) | 0.0292 (8) | |
| C2 | −0.3060 (4) | 0.0478 (4) | 0.8506 (2) | 0.0229 (7) | |
| C3 | −0.4729 (4) | 0.0766 (4) | 0.8157 (3) | 0.0259 (7) | |
| H3 | −0.491459 | 0.106685 | 0.746526 | 0.031* | |
| C4 | −0.6065 (4) | 0.0621 (4) | 0.8792 (2) | 0.0253 (7) | |
| H4 | −0.716770 | 0.083839 | 0.854527 | 0.030* | |
| C5 | −0.5832 (3) | 0.0151 (3) | 0.9818 (2) | 0.0204 (7) | |
| C6 | −0.7197 (4) | −0.0032 (4) | 1.0501 (2) | 0.0247 (7) | |
| H6 | −0.831308 | 0.016042 | 1.026474 | 0.030* | |
| C7 | 0.1971 (4) | −0.1257 (4) | 0.5574 (2) | 0.0232 (7) | |
| C8 | 0.3342 (4) | −0.2464 (4) | 0.5386 (2) | 0.0231 (7) | |
| C9 | 0.2888 (4) | −0.4062 (4) | 0.5012 (2) | 0.0266 (7) | |
| H9 | 0.173329 | −0.437095 | 0.484564 | 0.032* | |
| C10 | 0.4136 (4) | −0.5243 (4) | 0.4875 (2) | 0.0241 (7) | |
| C11 | 0.5046 (4) | −0.1977 (4) | 0.5621 (3) | 0.0281 (8) | |
| H11 | 0.534020 | −0.086805 | 0.587033 | 0.034* | |
| C12 | 0.6283 (4) | −0.3091 (4) | 0.5492 (3) | 0.0285 (8) | |
| H12 | 0.743193 | −0.274861 | 0.564835 | 0.034* | |
| C13 | 0.2535 (5) | 0.4026 (4) | 0.7188 (3) | 0.0369 (9) | |
| H13 | 0.341309 | 0.327989 | 0.705702 | 0.044* | |
| C14 | 0.1574 (6) | 0.6627 (5) | 0.7929 (4) | 0.0628 (13) | |
| H14A | 0.078313 | 0.652571 | 0.729974 | 0.075* | |
| H14B | 0.208053 | 0.774681 | 0.803717 | 0.075* | |
| C15 | 0.0611 (7) | 0.6341 (6) | 0.8898 (4) | 0.0970 (18) | |
| H15A | 0.013080 | 0.522378 | 0.879973 | 0.145* | |
| H15B | −0.030364 | 0.710761 | 0.899858 | 0.145* | |
| H15C | 0.137829 | 0.650364 | 0.952935 | 0.145* | |
| N1 | 0.2922 (4) | 0.5454 (4) | 0.7719 (2) | 0.0448 (8) | |
| C16 | 0.4576 (17) | 0.6215 (19) | 0.815 (2) | 0.061 (4) | 0.516 (8) |
| H16A | 0.487379 | 0.713730 | 0.775639 | 0.074* | 0.516 (8) |
| H16B | 0.447852 | 0.665014 | 0.890959 | 0.074* | 0.516 (8) |
| C17 | 0.5911 (12) | 0.5053 (11) | 0.8035 (8) | 0.065 (3) | 0.516 (8) |
| H17A | 0.563272 | 0.415235 | 0.843378 | 0.098* | 0.516 (8) |
| H17B | 0.698301 | 0.559271 | 0.831750 | 0.098* | 0.516 (8) |
| H17C | 0.601884 | 0.462995 | 0.727791 | 0.098* | 0.516 (8) |
| C16' | 0.4774 (18) | 0.575 (2) | 0.8054 (19) | 0.062 (4) | 0.484 (8) |
| H16C | 0.544874 | 0.496333 | 0.760003 | 0.074* | 0.484 (8) |
| H16D | 0.513676 | 0.685674 | 0.792220 | 0.074* | 0.484 (8) |
| C17' | 0.5149 (13) | 0.5600 (11) | 0.9178 (7) | 0.074 (3) | 0.484 (8) |
| H17D | 0.426986 | 0.611745 | 0.962205 | 0.110* | 0.484 (8) |
| H17E | 0.625043 | 0.613689 | 0.939854 | 0.110* | 0.484 (8) |
| H17F | 0.517878 | 0.444637 | 0.926528 | 0.110* | 0.484 (8) |
| Zn1 | 0.0191 (2) | 0.0234 (2) | 0.0272 (2) | 0.00401 (14) | 0.00315 (15) | 0.00116 (15) |
| O1 | 0.0203 (14) | 0.086 (2) | 0.0477 (17) | 0.0087 (13) | 0.0085 (12) | 0.0236 (15) |
| O2 | 0.0277 (13) | 0.0404 (14) | 0.0263 (13) | 0.0025 (10) | 0.0067 (11) | 0.0068 (11) |
| O3 | 0.0184 (12) | 0.0277 (12) | 0.0302 (13) | 0.0040 (9) | 0.0037 (10) | 0.0087 (10) |
| O4 | 0.0358 (15) | 0.0268 (13) | 0.0474 (16) | 0.0019 (10) | 0.0016 (12) | −0.0052 (11) |
| O5 | 0.0258 (12) | 0.0249 (13) | 0.0286 (13) | 0.0078 (9) | 0.0039 (10) | −0.0010 (10) |
| C1 | 0.0237 (19) | 0.0315 (19) | 0.033 (2) | 0.0043 (14) | 0.0064 (16) | 0.0037 (16) |
| C2 | 0.0208 (17) | 0.0233 (17) | 0.0232 (18) | 0.0008 (13) | 0.0028 (14) | −0.0022 (14) |
| C3 | 0.0250 (18) | 0.0267 (18) | 0.0270 (19) | 0.0046 (14) | 0.0008 (15) | 0.0064 (15) |
| C4 | 0.0172 (17) | 0.0308 (19) | 0.0277 (19) | 0.0021 (13) | −0.0044 (14) | 0.0042 (15) |
| C5 | 0.0170 (16) | 0.0211 (16) | 0.0222 (17) | 0.0014 (12) | −0.0003 (13) | 0.0003 (13) |
| C6 | 0.0143 (16) | 0.0288 (18) | 0.0308 (19) | 0.0031 (13) | −0.0004 (14) | 0.0027 (15) |
| C7 | 0.0287 (19) | 0.0256 (18) | 0.0176 (17) | 0.0068 (14) | 0.0075 (14) | 0.0079 (14) |
| C8 | 0.0220 (17) | 0.0257 (18) | 0.0224 (18) | 0.0067 (13) | 0.0039 (14) | 0.0046 (14) |
| C9 | 0.0188 (17) | 0.0334 (19) | 0.0284 (19) | 0.0058 (14) | 0.0032 (14) | 0.0050 (15) |
| C10 | 0.0215 (17) | 0.0276 (18) | 0.0241 (17) | 0.0035 (13) | 0.0036 (14) | 0.0049 (14) |
| C11 | 0.0274 (19) | 0.0260 (19) | 0.031 (2) | 0.0038 (14) | 0.0026 (15) | 0.0018 (15) |
| C12 | 0.0233 (18) | 0.0271 (18) | 0.034 (2) | −0.0003 (14) | 0.0039 (15) | 0.0011 (15) |
| C13 | 0.042 (2) | 0.032 (2) | 0.037 (2) | 0.0006 (16) | −0.0029 (18) | 0.0063 (17) |
| C14 | 0.089 (4) | 0.027 (2) | 0.067 (3) | −0.006 (2) | 0.010 (3) | −0.012 (2) |
| C15 | 0.111 (5) | 0.084 (4) | 0.087 (4) | −0.011 (3) | 0.037 (4) | −0.023 (3) |
| N1 | 0.057 (2) | 0.0383 (19) | 0.0367 (19) | −0.0130 (16) | −0.0097 (16) | 0.0030 (15) |
| C16 | 0.077 (6) | 0.051 (8) | 0.053 (6) | −0.018 (5) | −0.018 (5) | 0.006 (6) |
| C17 | 0.063 (6) | 0.069 (6) | 0.066 (6) | −0.014 (4) | −0.011 (5) | 0.022 (5) |
| C16' | 0.076 (6) | 0.052 (9) | 0.055 (6) | −0.028 (6) | −0.023 (6) | 0.013 (7) |
| C17' | 0.100 (7) | 0.061 (6) | 0.059 (6) | −0.021 (5) | −0.016 (5) | 0.015 (5) |
| Zn1—O2 | 1.949 (2) | C11—C12 | 1.368 (4) |
| Zn1—O4 | 1.979 (2) | C11—H11 | 0.9500 |
| Zn1—O5 | 1.980 (2) | C12—H12 | 0.9500 |
| Zn1—O3i | 2.026 (2) | C13—N1 | 1.302 (4) |
| Zn1—C1 | 2.571 (3) | C13—H13 | 0.9500 |
| O1—C1 | 1.231 (4) | C14—N1 | 1.474 (5) |
| O2—C1 | 1.280 (4) | C14—C15 | 1.503 (6) |
| O3—C7 | 1.267 (3) | C14—H14A | 0.9900 |
| O4—C13 | 1.246 (4) | C14—H14B | 0.9900 |
| O5—C7 | 1.264 (4) | C15—H15A | 0.9800 |
| C1—C2 | 1.496 (4) | C15—H15B | 0.9800 |
| C2—C6ii | 1.368 (4) | C15—H15C | 0.9800 |
| C2—C3 | 1.419 (4) | N1—C16 | 1.488 (11) |
| C3—C4 | 1.358 (4) | N1—C16' | 1.517 (11) |
| C3—H3 | 0.9500 | C16—C17 | 1.452 (17) |
| C4—C5 | 1.413 (4) | C16—H16A | 0.9900 |
| C4—H4 | 0.9500 | C16—H16B | 0.9900 |
| C5—C6 | 1.420 (4) | C17—H17A | 0.9800 |
| C5—C5ii | 1.424 (5) | C17—H17B | 0.9800 |
| C6—H6 | 0.9500 | C17—H17C | 0.9800 |
| C7—C8 | 1.504 (4) | C16'—C17' | 1.47 (2) |
| C8—C9 | 1.378 (4) | C16'—H16C | 0.9900 |
| C8—C11 | 1.406 (4) | C16'—H16D | 0.9900 |
| C9—C10 | 1.413 (4) | C17'—H17D | 0.9800 |
| C9—H9 | 0.9500 | C17'—H17E | 0.9800 |
| C10—C12iii | 1.422 (4) | C17'—H17F | 0.9800 |
| C10—C10iii | 1.426 (6) | ||
| O2—Zn1—O4 | 107.22 (9) | C8—C11—H11 | 119.8 |
| O2—Zn1—O5 | 136.08 (9) | C11—C12—C10iii | 120.5 (3) |
| O4—Zn1—O5 | 103.46 (9) | C11—C12—H12 | 119.7 |
| O2—Zn1—O3i | 99.73 (8) | C10iii—C12—H12 | 119.7 |
| O4—Zn1—O3i | 100.55 (9) | O4—C13—N1 | 123.8 (3) |
| O5—Zn1—O3i | 104.71 (8) | O4—C13—H13 | 118.1 |
| O2—Zn1—C1 | 28.93 (9) | N1—C13—H13 | 118.1 |
| O4—Zn1—C1 | 100.44 (10) | N1—C14—C15 | 111.5 (4) |
| O5—Zn1—C1 | 115.09 (9) | N1—C14—H14A | 109.3 |
| O3i—Zn1—C1 | 128.55 (9) | C15—C14—H14A | 109.3 |
| C1—O2—Zn1 | 103.60 (19) | N1—C14—H14B | 109.3 |
| C7—O3—Zn1i | 119.47 (19) | C15—C14—H14B | 109.3 |
| C13—O4—Zn1 | 127.3 (2) | H14A—C14—H14B | 108.0 |
| C7—O5—Zn1 | 107.70 (19) | C14—C15—H15A | 109.5 |
| O1—C1—O2 | 122.1 (3) | C14—C15—H15B | 109.5 |
| O1—C1—C2 | 121.0 (3) | H15A—C15—H15B | 109.5 |
| O2—C1—C2 | 116.8 (3) | C14—C15—H15C | 109.5 |
| O1—C1—Zn1 | 74.8 (2) | H15A—C15—H15C | 109.5 |
| O2—C1—Zn1 | 47.47 (15) | H15B—C15—H15C | 109.5 |
| C2—C1—Zn1 | 163.8 (2) | C13—N1—C14 | 118.8 (3) |
| C6ii—C2—C3 | 119.1 (3) | C13—N1—C16 | 131.2 (8) |
| C6ii—C2—C1 | 120.6 (3) | C14—N1—C16 | 110.0 (8) |
| C3—C2—C1 | 120.3 (3) | C13—N1—C16' | 115.1 (9) |
| C4—C3—C2 | 121.2 (3) | C14—N1—C16' | 126.1 (9) |
| C4—C3—H3 | 119.4 | C17—C16—N1 | 111.5 (12) |
| C2—C3—H3 | 119.4 | C17—C16—H16A | 109.3 |
| C3—C4—C5 | 120.7 (3) | N1—C16—H16A | 109.3 |
| C3—C4—H4 | 119.7 | C17—C16—H16B | 109.3 |
| C5—C4—H4 | 119.7 | N1—C16—H16B | 109.3 |
| C4—C5—C6 | 122.4 (3) | H16A—C16—H16B | 108.0 |
| C4—C5—C5ii | 119.0 (3) | C16—C17—H17A | 109.5 |
| C6—C5—C5ii | 118.6 (3) | C16—C17—H17B | 109.5 |
| C2ii—C6—C5 | 121.4 (3) | H17A—C17—H17B | 109.5 |
| C2ii—C6—H6 | 119.3 | C16—C17—H17C | 109.5 |
| C5—C6—H6 | 119.3 | H17A—C17—H17C | 109.5 |
| O5—C7—O3 | 122.1 (3) | H17B—C17—H17C | 109.5 |
| O5—C7—C8 | 118.2 (3) | C17'—C16'—N1 | 114.1 (15) |
| O3—C7—C8 | 119.6 (3) | C17'—C16'—H16C | 108.7 |
| C9—C8—C11 | 120.8 (3) | N1—C16'—H16C | 108.7 |
| C9—C8—C7 | 118.7 (3) | C17'—C16'—H16D | 108.7 |
| C11—C8—C7 | 120.5 (3) | N1—C16'—H16D | 108.7 |
| C8—C9—C10 | 120.1 (3) | H16C—C16'—H16D | 107.6 |
| C8—C9—H9 | 119.9 | C16'—C17'—H17D | 109.5 |
| C10—C9—H9 | 119.9 | C16'—C17'—H17E | 109.5 |
| C9—C10—C12iii | 121.8 (3) | H17D—C17'—H17E | 109.5 |
| C9—C10—C10iii | 119.2 (4) | C16'—C17'—H17F | 109.5 |
| C12iii—C10—C10iii | 118.9 (3) | H17D—C17'—H17F | 109.5 |
| C12—C11—C8 | 120.4 (3) | H17E—C17'—H17F | 109.5 |
| C12—C11—H11 | 119.8 |
| H··· | ||||
| C4—H4···O1iv | 0.95 | 2.39 | 3.307 (4) | 161 |
| C12—H12···O3v | 0.95 | 2.63 | 3.548 (4) | 156 |
| C16—H16··· | 0.95 | 2.99 | 3.520 (17) | 114 |
| C16—H16··· | 0.95 | 2.99 | 3.520 (17) | 114 |