| Literature DB >> 31709096 |
S N Sheshadri1, C S Chidan Kumar2, S Naveen3, M K Veeraiah4, Kakarla Raghava Reddy5, Ismail Warad6.
Abstract
The title com-pound, C15H11NO5, is relatively planar, with the planes of the two aromatic rings being inclined to each other by 3.09 (5)°. In the crystal, mol-ecules are linked by a pair of C-H⋯O hydrogen bonds, forming inversion dimers, which enclose an R 2 2(16) ring motif. The dimers are linked by a further pair of C-H⋯O hydrogen-bonds forming ribbons enclosing R 4 4(26) ring motifs. The ribbons are linked by offset π-π inter-actions [centroid-centroid distances = 3.6754 (6)-3.7519 (6) Å] to form layers parallel to the ac plane. Through Hirshfeld surface analyses, the d norm surfaces, electrostatic potential and two-dimensional fingerprint (FP) plots were examined to verify the contributions of the different inter-molecular contacts within the supra-molecular structure. The shape-index surface shows that two sides of the mol-ecule are involved with the same contacts in neighbouring mol-ecules, and the curvedness plot shows flat surface patches that are characteristic of planar stacking. © Sheshadri et al. 2019.Entities:
Keywords: C-H⋯O hydrogen bonds; Hirshfeld surface analysis; R_{2}^{2}(16) ring motif; crystal structure; offset π–π interactions
Year: 2019 PMID: 31709096 PMCID: PMC6829730 DOI: 10.1107/S2056989019013975
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of the title compound, with the atom labelling. Displacement ellipsoids are drawn at the 50% probability level.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C5—H5⋯O3i | 0.95 | 2.47 | 3.3967 (14) | 164 |
| C13—H13⋯O5ii | 0.95 | 2.54 | 3.2361 (14) | 130 |
Symmetry codes: (i) ; (ii) .
Figure 2A partial view of the crystal packing of the title compound. The hydrogen bonds are shown as dashed lines (Table 1 ▸) and only H atoms H5 and H13 have been included.
π–π contacts (Å, °) in the crystal of the title compound
Cg1 and Cg2 are the centroids of rings C1–C6 and C10–C15, respectively.
|
|
|
| α (°) | β (°) | γ (°) |
|
| offset (Å) |
|---|---|---|---|---|---|---|---|---|
|
|
| 3.6754 (6) | 3.09 (5) | 22.5 | 21.5 | 3.4199 (4) | 3.3948 (4) | 1.408 |
|
|
| 3.7519 (6) | 3.09 (5) | 27.9 | 25.1 | 3.3975 (4) | 3.3171 (4) | 1.753 |
|
|
| 3.7519 (6) | 3.09 (5) | 25.1 | 27.9 | 3.3171 (4) | 3.3975 (4) | 1.592 |
|
|
| 3.6754 (6) | 3.09 (5) | 21.5 | 22.5 | 3.3948 (4) | 3.4200 (4) | 1.346 |
Symmetry codes: (iii) x, y, z + 1; (iv) x + 1, y, z + 1; (v) x − 1, y, z − 1; (vi) x, y, z − 1.
Figure 3The crystal packing of the title compound, viewed along the c axis. The hydrogen bonds are shown as dashed lines (Table 1 ▸) and only H atoms H5 and H13 have been included.
Figure 4A view of the three-dimensional Hirshfeld surface of the title compound mapped over d norm.
Figure 5Hirshfeld surface of the title compound, mapped over (a) the shape-index and (b) the curvedness.
Figure 6Two-dimensional fingerprint plots of the title compound, showing the percentage contributions of all contacts and of individual atom-atom contacts.
Experimental details
| Crystal data | |
| Chemical formula | C15H11NO5 |
|
| 285.25 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 100 |
|
| 7.3371 (4), 21.0051 (11), 8.3069 (4) |
| β (°) | 102.711 (1) |
|
| 1248.86 (11) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 0.12 |
| Crystal size (mm) | 0.37 × 0.19 × 0.11 |
| Data collection | |
| Diffractometer | Bruker APEXII DUO CCD area-detector |
| Absorption correction | Multi-scan ( |
|
| 0.959, 0.988 |
| No. of measured, independent and observed [ | 14140, 3496, 3133 |
|
| 0.029 |
| (sin θ/λ)max (Å−1) | 0.708 |
| Refinement | |
|
| 0.041, 0.120, 1.06 |
| No. of reflections | 3696 |
| No. of parameters | 190 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.39, −0.30 |
Computer programs: APEX2 (Bruker, 2012 ▸), SAINT (Bruker, 2012 ▸), SHELXS97 (Sheldrick, 2008 ▸), Mercury (Macrae et al., 2008 ▸), SHELXL97 (Sheldrick, 2008 ▸), PLATON (Spek, 2009 ▸) and publCIF (Westrip, 2010 ▸).
| C15H11NO5 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 3133 reflections |
| θ = 1.9–30.2° | |
| µ = 0.12 mm−1 | |
| β = 102.711 (1)° | Needle, colourless |
| 0.37 × 0.19 × 0.11 mm | |
| Bruker APEXII DUO CCD area-detector diffractometer | 3496 independent reflections |
| Radiation source: Rotating Anode | 3133 reflections with |
| Graphite monochromator | |
| Detector resolution: 18.4 pixels mm-1 | θmax = 30.2°, θmin = 1.9° |
| φ and ω scans | |
| Absorption correction: multi-scan (SADABS; Bruker, 2012) | |
| 14140 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3696 reflections | (Δ/σ)max < 0.001 |
| 190 parameters | Δρmax = 0.39 e Å−3 |
| 0 restraints | Δρmin = −0.30 e Å−3 |
| Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles |
| Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > 2sigma(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger. |
| O1 | 0.14827 (11) | 0.38115 (4) | 0.37625 (9) | 0.0160 (2) | |
| O2 | 0.34743 (16) | 0.30646 (4) | 0.58368 (11) | 0.0357 (3) | |
| O3 | −0.02999 (13) | 0.46698 (4) | 0.29186 (10) | 0.0227 (3) | |
| O4 | 0.55675 (12) | 0.44140 (4) | 1.40112 (10) | 0.0228 (2) | |
| O5 | 0.70482 (14) | 0.35199 (5) | 1.40652 (11) | 0.0292 (3) | |
| N1 | 0.59732 (13) | 0.39281 (5) | 1.33492 (11) | 0.0167 (2) | |
| C1 | 0.47223 (14) | 0.31711 (5) | 0.92088 (13) | 0.0142 (3) | |
| C2 | 0.54458 (14) | 0.32506 (5) | 1.08833 (13) | 0.0142 (3) | |
| C3 | 0.51595 (14) | 0.38305 (5) | 1.15843 (12) | 0.0129 (2) | |
| C4 | 0.41568 (14) | 0.43237 (5) | 1.06970 (13) | 0.0137 (2) | |
| C5 | 0.34479 (14) | 0.42390 (5) | 0.90160 (12) | 0.0128 (2) | |
| C6 | 0.37472 (13) | 0.36653 (5) | 0.82655 (12) | 0.0123 (2) | |
| C7 | 0.30848 (15) | 0.35532 (5) | 0.64525 (13) | 0.0152 (3) | |
| C8 | 0.19380 (15) | 0.40611 (5) | 0.54070 (12) | 0.0144 (3) | |
| C9 | 0.03139 (14) | 0.41587 (5) | 0.26299 (12) | 0.0132 (2) | |
| C10 | −0.01390 (13) | 0.38341 (5) | 0.09985 (12) | 0.0122 (2) | |
| C11 | −0.11222 (14) | 0.41756 (5) | −0.03566 (13) | 0.0140 (3) | |
| C12 | −0.16055 (14) | 0.38880 (5) | −0.18959 (13) | 0.0159 (3) | |
| C13 | −0.11199 (15) | 0.32571 (5) | −0.20797 (13) | 0.0168 (3) | |
| C14 | −0.01248 (15) | 0.29164 (5) | −0.07323 (13) | 0.0162 (3) | |
| C15 | 0.03811 (14) | 0.32043 (5) | 0.08058 (13) | 0.0138 (3) | |
| H1 | 0.48900 | 0.27770 | 0.86970 | 0.0170* | |
| H2 | 0.61170 | 0.29180 | 1.15300 | 0.0170* | |
| H4 | 0.39580 | 0.47110 | 1.12250 | 0.0160* | |
| H5 | 0.27610 | 0.45710 | 0.83790 | 0.0150* | |
| H8A | 0.07880 | 0.41510 | 0.58050 | 0.0170* | |
| H8B | 0.26650 | 0.44600 | 0.54450 | 0.0170* | |
| H11 | −0.14620 | 0.46060 | −0.02260 | 0.0170* | |
| H12 | −0.22660 | 0.41220 | −0.28210 | 0.0190* | |
| H13 | −0.14680 | 0.30570 | −0.31290 | 0.0200* | |
| H14 | 0.02090 | 0.24860 | −0.08660 | 0.0190* | |
| H15 | 0.10770 | 0.29740 | 0.17220 | 0.0170* |
| O1 | 0.0200 (4) | 0.0170 (4) | 0.0090 (3) | 0.0052 (3) | −0.0008 (3) | −0.0008 (3) |
| O2 | 0.0581 (7) | 0.0226 (4) | 0.0179 (4) | 0.0205 (4) | −0.0097 (4) | −0.0078 (3) |
| O3 | 0.0325 (5) | 0.0174 (4) | 0.0160 (4) | 0.0090 (3) | 0.0003 (3) | −0.0014 (3) |
| O4 | 0.0256 (4) | 0.0266 (4) | 0.0150 (4) | 0.0018 (3) | 0.0018 (3) | −0.0064 (3) |
| O5 | 0.0366 (5) | 0.0313 (5) | 0.0149 (4) | 0.0113 (4) | −0.0048 (4) | 0.0036 (3) |
| N1 | 0.0159 (4) | 0.0219 (4) | 0.0115 (4) | 0.0000 (3) | 0.0015 (3) | 0.0007 (3) |
| C1 | 0.0155 (5) | 0.0123 (4) | 0.0142 (5) | −0.0001 (3) | 0.0017 (4) | 0.0004 (3) |
| C2 | 0.0142 (5) | 0.0138 (4) | 0.0137 (5) | 0.0008 (3) | 0.0012 (4) | 0.0032 (3) |
| C3 | 0.0120 (4) | 0.0171 (4) | 0.0093 (4) | −0.0018 (3) | 0.0015 (3) | 0.0007 (3) |
| C4 | 0.0142 (4) | 0.0138 (4) | 0.0128 (4) | 0.0007 (3) | 0.0026 (4) | −0.0012 (3) |
| C5 | 0.0130 (4) | 0.0128 (4) | 0.0119 (4) | 0.0016 (3) | 0.0010 (3) | 0.0007 (3) |
| C6 | 0.0117 (4) | 0.0126 (4) | 0.0119 (4) | −0.0012 (3) | 0.0012 (3) | −0.0005 (3) |
| C7 | 0.0171 (5) | 0.0145 (4) | 0.0120 (4) | 0.0007 (4) | −0.0012 (4) | −0.0007 (3) |
| C8 | 0.0184 (5) | 0.0149 (4) | 0.0089 (4) | 0.0024 (4) | 0.0010 (4) | −0.0004 (3) |
| C9 | 0.0139 (4) | 0.0142 (4) | 0.0112 (4) | −0.0001 (3) | 0.0020 (4) | 0.0019 (3) |
| C10 | 0.0115 (4) | 0.0144 (4) | 0.0106 (4) | −0.0010 (3) | 0.0021 (3) | 0.0002 (3) |
| C11 | 0.0136 (4) | 0.0151 (4) | 0.0129 (5) | 0.0012 (3) | 0.0022 (4) | 0.0021 (3) |
| C12 | 0.0142 (5) | 0.0207 (5) | 0.0118 (5) | −0.0004 (4) | 0.0007 (4) | 0.0030 (4) |
| C13 | 0.0180 (5) | 0.0209 (5) | 0.0109 (4) | −0.0024 (4) | 0.0022 (4) | −0.0011 (4) |
| C14 | 0.0203 (5) | 0.0156 (5) | 0.0128 (5) | 0.0002 (4) | 0.0041 (4) | −0.0012 (4) |
| C15 | 0.0157 (5) | 0.0142 (4) | 0.0113 (4) | 0.0004 (3) | 0.0027 (4) | 0.0015 (3) |
| O1—C8 | 1.4324 (12) | C10—C15 | 1.3958 (15) |
| O1—C9 | 1.3407 (13) | C11—C12 | 1.3879 (15) |
| O2—C7 | 1.2087 (14) | C12—C13 | 1.3894 (15) |
| O3—C9 | 1.2085 (14) | C13—C14 | 1.3923 (15) |
| O4—N1 | 1.2267 (13) | C14—C15 | 1.3883 (15) |
| O5—N1 | 1.2266 (14) | C1—H1 | 0.9500 |
| N1—C3 | 1.4706 (13) | C2—H2 | 0.9500 |
| C1—C2 | 1.3855 (15) | C4—H4 | 0.9500 |
| C1—C6 | 1.3988 (15) | C5—H5 | 0.9500 |
| C2—C3 | 1.3859 (15) | C8—H8A | 0.9900 |
| C3—C4 | 1.3853 (15) | C8—H8B | 0.9900 |
| C4—C5 | 1.3901 (14) | C11—H11 | 0.9500 |
| C5—C6 | 1.3962 (15) | C12—H12 | 0.9500 |
| C6—C7 | 1.4959 (14) | C13—H13 | 0.9500 |
| C7—C8 | 1.5096 (15) | C14—H14 | 0.9500 |
| C9—C10 | 1.4878 (14) | C15—H15 | 0.9500 |
| C10—C11 | 1.3945 (14) | ||
| C8—O1—C9 | 116.69 (8) | C12—C13—C14 | 120.25 (10) |
| O4—N1—O5 | 123.90 (9) | C13—C14—C15 | 120.18 (10) |
| O4—N1—C3 | 118.53 (9) | C10—C15—C14 | 119.60 (10) |
| O5—N1—C3 | 117.56 (9) | C2—C1—H1 | 120.00 |
| C2—C1—C6 | 120.58 (10) | C6—C1—H1 | 120.00 |
| C1—C2—C3 | 117.89 (10) | C1—C2—H2 | 121.00 |
| N1—C3—C2 | 118.40 (9) | C3—C2—H2 | 121.00 |
| N1—C3—C4 | 118.54 (9) | C3—C4—H4 | 121.00 |
| C2—C3—C4 | 123.06 (9) | C5—C4—H4 | 121.00 |
| C3—C4—C5 | 118.44 (10) | C4—C5—H5 | 120.00 |
| C4—C5—C6 | 119.88 (9) | C6—C5—H5 | 120.00 |
| C1—C6—C5 | 120.11 (9) | O1—C8—H8A | 111.00 |
| C1—C6—C7 | 117.39 (9) | O1—C8—H8B | 111.00 |
| C5—C6—C7 | 122.50 (9) | C7—C8—H8A | 111.00 |
| O2—C7—C6 | 120.33 (10) | C7—C8—H8B | 111.00 |
| O2—C7—C8 | 120.69 (10) | H8A—C8—H8B | 109.00 |
| C6—C7—C8 | 118.98 (9) | C10—C11—H11 | 120.00 |
| O1—C8—C7 | 105.87 (8) | C12—C11—H11 | 120.00 |
| O1—C9—O3 | 123.56 (9) | C11—C12—H12 | 120.00 |
| O1—C9—C10 | 111.72 (9) | C13—C12—H12 | 120.00 |
| O3—C9—C10 | 124.72 (9) | C12—C13—H13 | 120.00 |
| C9—C10—C11 | 118.15 (9) | C14—C13—H13 | 120.00 |
| C9—C10—C15 | 121.80 (9) | C13—C14—H14 | 120.00 |
| C11—C10—C15 | 120.06 (9) | C15—C14—H14 | 120.00 |
| C10—C11—C12 | 120.11 (10) | C10—C15—H15 | 120.00 |
| C11—C12—C13 | 119.78 (10) | C14—C15—H15 | 120.00 |
| C9—O1—C8—C7 | 174.08 (9) | C1—C6—C7—C8 | 176.74 (10) |
| C8—O1—C9—O3 | 2.69 (15) | C5—C6—C7—O2 | 175.36 (11) |
| C8—O1—C9—C10 | −176.70 (9) | C5—C6—C7—C8 | −4.18 (15) |
| O4—N1—C3—C2 | −172.74 (10) | O2—C7—C8—O1 | 1.88 (15) |
| O4—N1—C3—C4 | 7.80 (15) | C6—C7—C8—O1 | −178.58 (9) |
| O5—N1—C3—C2 | 8.46 (15) | O1—C9—C10—C11 | −171.02 (9) |
| O5—N1—C3—C4 | −171.00 (10) | O1—C9—C10—C15 | 9.44 (14) |
| C6—C1—C2—C3 | 0.43 (16) | O3—C9—C10—C11 | 9.60 (16) |
| C2—C1—C6—C5 | −1.83 (16) | O3—C9—C10—C15 | −169.95 (11) |
| C2—C1—C6—C7 | 177.27 (10) | C9—C10—C11—C12 | −178.79 (10) |
| C1—C2—C3—N1 | −178.03 (9) | C15—C10—C11—C12 | 0.77 (15) |
| C1—C2—C3—C4 | 1.41 (16) | C9—C10—C15—C14 | 178.01 (10) |
| N1—C3—C4—C5 | 177.65 (9) | C11—C10—C15—C14 | −1.52 (15) |
| C2—C3—C4—C5 | −1.79 (16) | C10—C11—C12—C13 | 0.53 (16) |
| C3—C4—C5—C6 | 0.33 (15) | C11—C12—C13—C14 | −1.06 (16) |
| C4—C5—C6—C1 | 1.43 (15) | C12—C13—C14—C15 | 0.30 (17) |
| C4—C5—C6—C7 | −177.62 (10) | C13—C14—C15—C10 | 0.99 (16) |
| C1—C6—C7—O2 | −3.72 (16) |
| H··· | ||||
| C5—H5···O3i | 0.95 | 2.47 | 3.3967 (14) | 164 |
| C13—H13···O5ii | 0.95 | 2.54 | 3.2361 (14) | 130 |