| Literature DB >> 31709095 |
Keshab M Bairagi1, Priyanka Pal1, Subhrajyoti Bhandary2, Katharigatta N Venugopala3,4, Deepak Chopra2, Susanta K Nayak1.
Abstract
In the title 1:1 cocrystal, C7H4ClNO4·C6H6N2O, nicotinamide (NIC) and 2-chloro-5-nitro-benzoic acid (CNBA) cocrystallize with one mol-ecule each of NIC and CNBA in the asymmetric unit. In this structure, CNBA and NIC form hydrogen bonds through O-H⋯N, N-H⋯O and C-H⋯O inter-actions along with N-H⋯O dimer hydrogen bonds of NIC. Further additional weak π-π inter-actions stabilize the mol-ecular assembly of this cocrystal. © Bairagi et al. 2019.Entities:
Keywords: 2-chloro-5-nitrobenzoic acid; Hirshfeld surface; cocrystal; crystal structure; nicotinamide
Year: 2019 PMID: 31709095 PMCID: PMC6829734 DOI: 10.1107/S2056989019013859
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The asymmetric unit of the title compound, showing 50% probability ellipsoids, the atom labelling and hydrogen bonding with dotted lines.
Figure 2Hydrogen bonds in the title compound showing the dimer formation through N—H⋯O interactions and tetramer formation through C—H⋯O interactions.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1 | 0.90 (2) | 2.005 (19) | 2.9004 (15) | 171.4 (14) |
| N1—H1 | 0.873 (19) | 2.116 (19) | 2.9715 (14) | 166.6 (16) |
| O2—H2⋯N2 | 1.07 (2) | 1.49 (2) | 2.5543 (13) | 172 (2) |
| C3—H3⋯O4 | 0.986 (15) | 2.516 (15) | 3.4505 (16) | 158.2 (12) |
| C4—H4⋯O5 | 0.979 (14) | 2.442 (15) | 3.3256 (17) | 149.9 (12) |
| C5—H5⋯O5 | 0.956 (15) | 2.450 (16) | 3.0878 (17) | 124.0 (11) |
| C6—H6⋯O3 | 0.959 (15) | 2.608 (15) | 3.452 (1) | 147.0 (11) |
| C10—H10⋯O4 | 0.955 (15) | 2.599 (16) | 3.5010 (18) | 157.6 (15) |
Figure 3Weak π–π interactions stabilize the molecular assembly of both molecules in the crystal.
Figure 4Hirshfeld surfaces developed on (i) d norm mapped over the pure NIC molecule, (ii) d norm mapped over the NIC molecule in title compound, (iii) d norm mapped over the pure CNBA molecule and (iv) d norm mapped over the CNBA molecule in title compound.
Figure 5Two-dimensional fingerprint plots and relative contributions of various interactions to the Hirshfeld surface of the NIC cocrystal molecule.
Figure 6Two-dimensional fingerprint plots and relative contributions of various interactions to the Hirshfeld surface of the pure NIC molecule.
Figure 7Two-dimensional fingerprint plots and relative contributions of various interactions to the Hirshfeld surface of the CNBA cocrystal molecule.
Figure 8Two-dimensional fingerprint plots and relative contributions of various interactions to the Hirshfeld surface of the pure CNBA molecule
Experimental details
| Crystal data | |
| Chemical formula | C7H4ClNO4·C6H6N2O |
|
| 323.69 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 123 |
|
| 7.4897 (1), 26.3607 (5), 7.0623 (1) |
| β (°) | 96.356 (1) |
|
| 1385.77 (4) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 0.31 |
| Crystal size (mm) | 0.28 × 0.22 × 0.15 |
| Data collection | |
| Diffractometer | Bruker Kappa APEXII DUO |
| Absorption correction | Multi-scan ( |
|
| 0.874, 0.908 |
| No. of measured, independent and observed [ | 29950, 4123, 3316 |
|
| 0.037 |
| (sin θ/λ)max (Å−1) | 0.708 |
| Refinement | |
|
| 0.038, 0.094, 1.08 |
| No. of reflections | 4123 |
| No. of parameters | 239 |
| H-atom treatment | All H-atom parameters refined |
| Δρmax, Δρmin (e Å−3) | 0.30, −0.26 |
Computer programs: APEX2 (Bruker, 2012 ▸), SAINT (Bruker, 2012 ▸), SHELXS18 (Sheldrick, 2015 ▸), SHELXL2018 (Sheldrick, 2015 ▸), Mercury (Macrae et al., 2008 ▸), OLEX2 (Dolomanov et al., 2009 ▸) and PLATON (Spek, 2009 ▸).
| C7H4ClNO4·C6H6N2O | |
| Melting point: 159.7 K | |
| Monoclinic, | Mo |
| Cell parameters from 4123 reflections | |
| θ = 1.5–30.2° | |
| µ = 0.31 mm−1 | |
| β = 96.356 (1)° | |
| Block, colorless | |
| 0.28 × 0.22 × 0.15 mm | |
| Bruker Kappa APEXII DUO diffractometer | 4123 independent reflections |
| Radiation source: fine-focus sealed tube | 3316 reflections with |
| Graphite monochromator | |
| ω scans | θmax = 30.2°, θmin = 1.6° |
| Absorption correction: multi-scan (SADABS; Bruker, 2001) | |
| 29950 measured reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: difference Fourier map |
| All H-atom parameters refined | |
| (Δ/σ)max < 0.001 | |
| 4123 reflections | Δρmax = 0.30 e Å−3 |
| 239 parameters | Δρmin = −0.26 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Single-crystal X-ray diffraction data were collected on a Bruker
KAPPA APEX II DUO diffractometer using graphite-monochromated
Mo-Kα radiation (λ = 0.71073Å)(Bruker, 2012). The data collection
was performed at 153 (2) K. The temperature was monitored by an Oxford
Cryostream cooling system (Oxford Cryostat). the program SAINT
(Bruker, 2012) were used for cell refinement and data reduction.
The data were scaled and absorption correction performed using
SADABS(Bruker, 2001). The structure was solved by direct methods
using SHELXS-18(Sheldrick, 2015) and refined by full-matrix
least-squares methods based on F2 using SHELXL-2018/3(Sheldrick, 2015).
The computing , Mercury(Macrae |
| Cl1 | −0.18141 (5) | 0.18331 (2) | 0.33099 (6) | 0.04137 (12) | |
| O2 | 0.39368 (12) | 0.16413 (3) | 0.29015 (14) | 0.0267 (2) | |
| O1 | 0.87918 (13) | 0.45197 (3) | 1.35865 (13) | 0.0268 (2) | |
| O5 | 0.29333 (16) | 0.39338 (4) | 0.38136 (16) | 0.0381 (3) | |
| O3 | 0.16833 (14) | 0.13103 (3) | 0.43221 (14) | 0.0308 (2) | |
| O4 | 0.50015 (15) | 0.34087 (4) | 0.32242 (18) | 0.0417 (3) | |
| N1 | 0.87836 (15) | 0.53606 (4) | 1.29452 (16) | 0.0226 (2) | |
| N2 | 0.57395 (14) | 0.41744 (4) | 0.85619 (15) | 0.0208 (2) | |
| N3 | 0.34615 (16) | 0.35059 (4) | 0.35149 (16) | 0.0262 (2) | |
| C6 | 0.75383 (15) | 0.50921 (4) | 0.89924 (17) | 0.0189 (2) | |
| C1 | 0.83945 (15) | 0.48801 (4) | 1.24921 (17) | 0.0193 (2) | |
| C2 | 0.74506 (15) | 0.47734 (4) | 1.05512 (16) | 0.0172 (2) | |
| C12 | 0.21719 (17) | 0.30889 (4) | 0.35036 (17) | 0.0209 (2) | |
| C4 | 0.59051 (17) | 0.44720 (5) | 0.70484 (18) | 0.0221 (2) | |
| C13 | 0.28144 (16) | 0.25993 (4) | 0.35032 (17) | 0.0193 (2) | |
| C5 | 0.67736 (17) | 0.49327 (5) | 0.72106 (18) | 0.0217 (2) | |
| C9 | −0.02066 (17) | 0.23039 (5) | 0.34499 (19) | 0.0243 (3) | |
| C3 | 0.65244 (16) | 0.43172 (4) | 1.02733 (17) | 0.0201 (2) | |
| C8 | 0.16239 (16) | 0.21927 (4) | 0.35036 (16) | 0.0191 (2) | |
| C10 | −0.08225 (18) | 0.28024 (5) | 0.3432 (2) | 0.0291 (3) | |
| C7 | 0.24078 (17) | 0.16659 (4) | 0.36051 (17) | 0.0205 (2) | |
| C11 | 0.03681 (19) | 0.32024 (5) | 0.34746 (19) | 0.0261 (3) | |
| H3 | 0.639 (2) | 0.4084 (6) | 1.134 (2) | 0.022 (4)* | |
| H6 | 0.813 (2) | 0.5415 (6) | 0.909 (2) | 0.022 (4)* | |
| H13 | 0.404 (2) | 0.2537 (6) | 0.352 (2) | 0.028 (4)* | |
| H4 | 0.540 (2) | 0.4339 (6) | 0.581 (2) | 0.025 (4)* | |
| H5 | 0.691 (2) | 0.5138 (6) | 0.612 (2) | 0.026 (4)* | |
| H1A | 0.947 (2) | 0.5426 (6) | 1.405 (3) | 0.035 (4)* | |
| H1B | 0.850 (2) | 0.5613 (7) | 1.216 (3) | 0.038 (5)* | |
| H11 | −0.006 (2) | 0.3550 (7) | 0.346 (3) | 0.040 (5)* | |
| H10 | −0.208 (3) | 0.2870 (7) | 0.338 (3) | 0.042 (5)* | |
| H2 | 0.462 (3) | 0.1292 (9) | 0.326 (3) | 0.074 (7)* |
| Cl1 | 0.02685 (18) | 0.0403 (2) | 0.0562 (3) | −0.01523 (14) | 0.00135 (15) | 0.00272 (16) |
| O2 | 0.0251 (5) | 0.0190 (4) | 0.0362 (5) | 0.0037 (3) | 0.0040 (4) | 0.0050 (4) |
| O1 | 0.0362 (5) | 0.0207 (4) | 0.0216 (5) | −0.0011 (4) | −0.0050 (4) | 0.0024 (3) |
| O5 | 0.0529 (7) | 0.0147 (4) | 0.0430 (6) | −0.0008 (4) | −0.0109 (5) | −0.0029 (4) |
| O3 | 0.0424 (6) | 0.0172 (4) | 0.0346 (5) | −0.0037 (4) | 0.0115 (4) | 0.0017 (4) |
| O4 | 0.0345 (6) | 0.0268 (5) | 0.0654 (8) | −0.0094 (4) | 0.0126 (5) | 0.0039 (5) |
| N1 | 0.0265 (5) | 0.0186 (5) | 0.0213 (5) | 0.0006 (4) | −0.0040 (4) | −0.0017 (4) |
| N2 | 0.0211 (5) | 0.0163 (5) | 0.0243 (5) | −0.0016 (4) | −0.0008 (4) | −0.0014 (4) |
| N3 | 0.0357 (6) | 0.0165 (5) | 0.0253 (6) | −0.0031 (4) | −0.0022 (4) | 0.0021 (4) |
| C6 | 0.0196 (5) | 0.0151 (5) | 0.0220 (6) | −0.0004 (4) | 0.0022 (4) | −0.0009 (4) |
| C1 | 0.0187 (5) | 0.0192 (6) | 0.0200 (6) | 0.0007 (4) | 0.0023 (4) | −0.0015 (4) |
| C2 | 0.0167 (5) | 0.0164 (5) | 0.0184 (5) | 0.0018 (4) | 0.0015 (4) | −0.0014 (4) |
| C12 | 0.0275 (6) | 0.0164 (5) | 0.0184 (6) | −0.0018 (4) | 0.0006 (4) | 0.0000 (4) |
| C4 | 0.0247 (6) | 0.0197 (6) | 0.0207 (6) | 0.0010 (5) | −0.0022 (5) | −0.0025 (4) |
| C13 | 0.0209 (5) | 0.0183 (5) | 0.0186 (6) | −0.0003 (4) | 0.0011 (4) | 0.0004 (4) |
| C5 | 0.0268 (6) | 0.0184 (6) | 0.0194 (6) | 0.0004 (4) | 0.0006 (5) | 0.0017 (4) |
| C9 | 0.0216 (6) | 0.0256 (6) | 0.0257 (6) | −0.0044 (5) | 0.0025 (5) | 0.0000 (5) |
| C3 | 0.0216 (5) | 0.0173 (5) | 0.0212 (6) | −0.0002 (4) | 0.0015 (4) | 0.0001 (4) |
| C8 | 0.0216 (5) | 0.0177 (5) | 0.0177 (6) | −0.0017 (4) | 0.0012 (4) | −0.0002 (4) |
| C10 | 0.0217 (6) | 0.0320 (7) | 0.0335 (7) | 0.0045 (5) | 0.0027 (5) | 0.0004 (5) |
| C7 | 0.0266 (6) | 0.0167 (5) | 0.0174 (6) | −0.0019 (4) | −0.0011 (4) | −0.0008 (4) |
| C11 | 0.0305 (7) | 0.0218 (6) | 0.0255 (7) | 0.0061 (5) | 0.0010 (5) | −0.0004 (5) |
| Cl1—C9 | 1.7244 (13) | C1—C2 | 1.4977 (16) |
| O2—C7 | 1.2994 (15) | C2—C3 | 1.3913 (16) |
| O2—H2 | 1.07 (2) | C12—C13 | 1.3774 (16) |
| O1—C1 | 1.2399 (14) | C12—C11 | 1.3816 (18) |
| O5—N3 | 1.2215 (15) | C4—C5 | 1.3766 (17) |
| O3—C7 | 1.2208 (14) | C4—H4 | 0.977 (16) |
| O4—N3 | 1.2209 (16) | C13—C8 | 1.3941 (16) |
| N1—C1 | 1.3307 (16) | C13—H13 | 0.932 (16) |
| N1—H1A | 0.901 (19) | C5—H5 | 0.957 (16) |
| N1—H1B | 0.876 (18) | C9—C10 | 1.3921 (19) |
| N2—C3 | 1.3383 (16) | C9—C8 | 1.3984 (17) |
| N2—C4 | 1.3426 (16) | C3—H3 | 0.984 (15) |
| N3—C12 | 1.4626 (16) | C8—C7 | 1.5064 (16) |
| C6—C5 | 1.3887 (17) | C10—C11 | 1.379 (2) |
| C6—C2 | 1.3922 (16) | C10—H10 | 0.955 (18) |
| C6—H6 | 0.959 (15) | C11—H11 | 0.971 (18) |
| C7—O2—H2 | 111.9 (13) | C12—C13—H13 | 120.6 (9) |
| C1—N1—H1A | 118.6 (11) | C8—C13—H13 | 119.6 (9) |
| C1—N1—H1B | 122.7 (12) | C4—C5—C6 | 119.08 (11) |
| H1A—N1—H1B | 118.4 (16) | C4—C5—H5 | 121.5 (9) |
| C3—N2—C4 | 118.98 (10) | C6—C5—H5 | 119.4 (9) |
| O4—N3—O5 | 123.56 (12) | C10—C9—C8 | 121.40 (11) |
| O4—N3—C12 | 118.49 (11) | C10—C9—Cl1 | 116.76 (10) |
| O5—N3—C12 | 117.95 (12) | C8—C9—Cl1 | 121.80 (10) |
| C5—C6—C2 | 118.89 (11) | N2—C3—C2 | 122.20 (11) |
| C5—C6—H6 | 118.5 (9) | N2—C3—H3 | 116.1 (9) |
| C2—C6—H6 | 122.6 (9) | C2—C3—H3 | 121.7 (9) |
| O1—C1—N1 | 123.25 (11) | C13—C8—C9 | 117.65 (11) |
| O1—C1—C2 | 118.88 (10) | C13—C8—C7 | 117.57 (10) |
| N1—C1—C2 | 117.87 (11) | C9—C8—C7 | 124.77 (11) |
| C3—C2—C6 | 118.46 (11) | C11—C10—C9 | 120.57 (12) |
| C3—C2—C1 | 117.96 (10) | C11—C10—H10 | 119.3 (11) |
| C6—C2—C1 | 123.47 (10) | C9—C10—H10 | 120.1 (11) |
| C13—C12—C11 | 122.95 (11) | O3—C7—O2 | 124.84 (11) |
| C13—C12—N3 | 118.27 (11) | O3—C7—C8 | 122.60 (11) |
| C11—C12—N3 | 118.78 (11) | O2—C7—C8 | 112.54 (10) |
| N2—C4—C5 | 122.26 (11) | C10—C11—C12 | 117.62 (12) |
| N2—C4—H4 | 116.2 (9) | C10—C11—H11 | 120.6 (11) |
| C5—C4—H4 | 121.6 (9) | C12—C11—H11 | 121.8 (11) |
| C12—C13—C8 | 119.79 (11) | ||
| C5—C6—C2—C3 | −2.96 (17) | C1—C2—C3—N2 | −175.60 (10) |
| C5—C6—C2—C1 | 173.20 (11) | C12—C13—C8—C9 | 1.77 (17) |
| O1—C1—C2—C3 | 21.57 (16) | C12—C13—C8—C7 | −176.93 (11) |
| N1—C1—C2—C3 | −159.19 (11) | C10—C9—C8—C13 | −1.15 (19) |
| O1—C1—C2—C6 | −154.61 (12) | Cl1—C9—C8—C13 | 176.29 (9) |
| N1—C1—C2—C6 | 24.63 (17) | C10—C9—C8—C7 | 177.44 (12) |
| O4—N3—C12—C13 | 11.29 (17) | Cl1—C9—C8—C7 | −5.12 (18) |
| O5—N3—C12—C13 | −168.81 (12) | C8—C9—C10—C11 | −0.3 (2) |
| O4—N3—C12—C11 | −168.07 (12) | Cl1—C9—C10—C11 | −177.83 (11) |
| O5—N3—C12—C11 | 11.83 (17) | C13—C8—C7—O3 | 151.23 (12) |
| C3—N2—C4—C5 | −3.55 (18) | C9—C8—C7—O3 | −27.36 (19) |
| C11—C12—C13—C8 | −1.03 (19) | C13—C8—C7—O2 | −26.97 (15) |
| N3—C12—C13—C8 | 179.64 (11) | C9—C8—C7—O2 | 154.44 (12) |
| N2—C4—C5—C6 | 1.33 (19) | C9—C10—C11—C12 | 1.0 (2) |
| C2—C6—C5—C4 | 1.97 (17) | C13—C12—C11—C10 | −0.4 (2) |
| C4—N2—C3—C2 | 2.47 (17) | N3—C12—C11—C10 | 178.92 (12) |
| C6—C2—C3—N2 | 0.78 (17) |
| H··· | ||||
| N1—H1 | 0.90 (2) | 2.005 (19) | 2.9004 (15) | 171.4 (14) |
| N1—H1 | 0.873 (19) | 2.116 (19) | 2.9715 (14) | 166.6 (16) |
| O2—H2···N2 | 1.07 (2) | 1.49 (2) | 2.5543 (13) | 172 (2) |
| C3—H3···O4 | 0.986 (15) | 2.516 (15) | 3.4505 (16) | 158.2 (12) |
| C4—H4···O5 | 0.979 (14) | 2.442 (15) | 3.3256 (17) | 149.9 (12) |
| C5—H5···O5 | 0.956 (15) | 2.450 (16) | 3.0878 (17) | 124.0 (11) |
| C6—H6···O3 | 0.959 (15) | 2.608 (15) | 3.452 (1) | 147.0 (11) |
| C10—H10···O4 | 0.955 (15) | 2.599 (16) | 3.5010 (18) | 157.6 (15) |