| Literature DB >> 31709077 |
Andrea B Simões1, Flávio Figueira1, Ricardo F Mendes1, Jéssica S Barbosa1,2, João Rocha1, Filipe A Almeida Paz1.
Abstract
A one-dimensional ladder-type coordination polymer, poly[[(μ2-hydroxido)(μ2-1H-pyrazole-3,5-di-carboxyl-ato)gallium(III)] monohydrate], [Ga(C5H2N2O4)(OH)(H2O)] n or [Ga(HPDC)(OH)(H2O)] n , I, isotypic with a V3+ coordination polymer previously reported by Chen et al. [J. Coord. Chem. (2008). 61, 3556-3567] was prepared from Ga3+ and pyrazole-3,5-di-carb-oxy-lic acid monohydrate (H3PDC·H2O). Compound I was isolated using three distinct experimental methods: hydro-thermal (HT), microwave-assisted (MWAS) and one-pot (OP) and the crystallite size should be fine-tuned according to the method employed. The coordination polymeric structure is based on a dimeric Ga3+ moiety comprising two μ2-bridging hydroxide groups, which are inter-connected by HPDC2- anionic organic linkers. The close packing of individual polymers is strongly directed by the supra-molecular inter-actions, namely several O-H⋯O and N-H⋯O hydrogen-bonding inter-actions. © Simões et al. 2019.Entities:
Keywords: coordination polymers; crystal structure; gallium
Year: 2019 PMID: 31709077 PMCID: PMC6829714 DOI: 10.1107/S2056989019013446
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1Scanning electron microscopy (SEM) images of bulk [Ga(HPDC)(OH)(H2O)] (I) obtained by microwave-assisted synthesis (MWAS), hydrothermal synthesis (HT) and a one-pot process (OP).
Figure 2(a) Schematic representation of the asymmetric unit of [Ga(HPDC)(OH)(H2O)] (I) showing all non-H atoms shown with displacement ellipsoids drawn at the 50% probability level and H atoms as small spheres with arbitrary radii. The coordination sphere of the crystallographically independent metal centre was completed by generating the remaining atoms through symmetry. [Symmetry codes: (i) −x, −y, −z + 2; (ii) x, y, z + 1 (b) Ga3+ dimer formed by two symmetry-related bridging hydroxyl groups.
Selected geometric parameters (Å, °)
| Ga1—O1 | 1.903 (3) | Ga1—O2ii | 1.987 (3) |
| Ga1—O5 | 1.932 (3) | Ga1—O1 | 1.988 (3) |
| Ga1—O1i | 1.974 (3) | Ga1—N2ii | 2.112 (3) |
| O1—Ga1—O5 | 101.59 (12) | O1i—Ga1—O1 | 178.65 (12) |
| O1—Ga1—O1i | 79.94 (13) | O2ii—Ga1—O1 | 91.00 (11) |
| O5—Ga1—O1i | 93.13 (12) | O1—Ga1—N2ii | 93.94 (12) |
| O1—Ga1—O2ii | 166.31 (11) | O5—Ga1—N2ii | 164.18 (12) |
| O5—Ga1—O2ii | 87.28 (11) | O1i—Ga1—N2ii | 92.49 (12) |
| O1i—Ga1—O2ii | 89.26 (11) | O2ii—Ga1—N2ii | 78.02 (11) |
| O1—Ga1—O1 | 99.60 (12) | O1 | 86.27 (12) |
| O5—Ga1—O1 | 88.20 (12) |
Symmetry codes: (i) ; (ii) .
Figure 3Schematic representation of the (a) one-dimensional ladder-type coordination polymer present in I, and (b) the close packing of the polymers viewed along the [010] direction of the unit cell.
Figure 4Schematic representation of a portion of the crystal packing of [Ga(HPDC)(OH)(H2O)] (I) depicting the O—H⋯O and N—H⋯O supramolecular contacts (orange dashed lines) between ladder-type polymers. For geometrical details on the represented interactions see Table 2 ▸ (the symmetry codes used to generate equivalent atoms have been omitted for clarity).
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1 | 0.94 | 1.73 | 2.643 (4) | 164 |
| O1 | 0.94 | 1.89 | 2.803 (4) | 165 |
| O1—H1⋯O3v | 0.77 | 1.99 | 2.751 (4) | 175 |
| N1—H1 | 0.88 | 1.96 | 2.773 (4) | 152 |
Symmetry codes: (iii) ; (iv) ; (v) ; (vi) .
Figure 5Crystal packing of [Ga(HPDC)(OH)(H2O)] (I) viewed along the [001] direction of the unit cell.
Experimental details
| Crystal data | |
| Chemical formula | [Ga(C5H2N2O4)(OH)(H2O)] |
|
| 258.83 |
| Crystal system, space group | Triclinic, |
| Temperature (K) | 150 |
|
| 6.6055 (13), 6.8830 (16), 8.5178 (19) |
| α, β, γ (°) | 94.804 (8), 101.306 (7), 108.596 (7) |
|
| 355.44 (14) |
|
| 2 |
| Radiation type | Mo |
| μ (mm−1) | 3.88 |
| Crystal size (mm) | 0.13 × 0.10 × 0.07 |
| Data collection | |
| Diffractometer | Bruker D8 QUEST |
| Absorption correction | Multi-scan ( |
| No. of measured, independent and observed [ | 5768, 1303, 1182 |
|
| 0.034 |
| (sin θ/λ)max (Å−1) | 0.603 |
| Refinement | |
|
| 0.031, 0.074, 1.11 |
| No. of reflections | 1303 |
| No. of parameters | 136 |
| No. of restraints | 3 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.65, −0.47 |
Computer programs: APEX3 (Bruker, 2016 ▸), SAINT (Bruker, 2015 ▸), SHELXT2014 (Sheldrick, 2015a ▸), SHELXL2018 (Sheldrick, 2015b ▸), PLATON (Spek, 2009 ▸) and DIAMOND (Brandenburg, 1999 ▸).
| [Ga(C5H2N2O4)(OH)(H2O)] | |
| Triclinic, | |
| Mo | |
| Cell parameters from 3255 reflections | |
| θ = 2.5–25.4° | |
| α = 94.804 (8)° | µ = 3.88 mm−1 |
| β = 101.306 (7)° | |
| γ = 108.596 (7)° | Block, colourless |
| 0.13 × 0.10 × 0.07 mm |
| Bruker D8 QUEST diffractometer | 1303 independent reflections |
| Radiation source: Sealed tube | 1182 reflections with |
| Multi-layer X-ray mirror monochromator | |
| Detector resolution: 10.4167 pixels mm-1 | θmax = 25.4°, θmin = 3.7° |
| ω / φ scans | |
| Absorption correction: multi-scan (SADABS; Bruker, 2001; Krause | |
| 5768 measured reflections |
| Refinement on | 3 restraints |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.001 | |
| 1303 reflections | Δρmax = 0.65 e Å−3 |
| 136 parameters | Δρmin = −0.47 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Ga1 | 0.20874 (7) | 0.17985 (7) | 1.03804 (5) | 0.00844 (15) | |
| O1W | 0.5321 (4) | 0.2428 (4) | 1.0908 (3) | 0.0140 (6) | |
| H1X | 0.604 (6) | 0.162 (6) | 1.147 (5) | 0.021* | |
| H1Y | 0.627 (5) | 0.335 (5) | 1.040 (5) | 0.021* | |
| O1 | 0.1126 (4) | −0.1152 (4) | 1.0094 (3) | 0.0100 (6) | |
| H1 | 0.142 (8) | −0.167 (7) | 1.082 (6) | 0.015* | |
| N1 | 0.2437 (5) | 0.1027 (5) | 0.4128 (4) | 0.0102 (7) | |
| H1N | 0.249943 | −0.023469 | 0.404671 | 0.012* | |
| N2 | 0.2363 (5) | 0.2116 (5) | 0.2909 (4) | 0.0088 (7) | |
| C1 | 0.2537 (6) | 0.1216 (6) | 0.7048 (5) | 0.0103 (8) | |
| C2 | 0.2405 (6) | 0.2131 (6) | 0.5511 (4) | 0.0089 (8) | |
| C3 | 0.2296 (6) | 0.4004 (6) | 0.5154 (5) | 0.0102 (8) | |
| H3 | 0.223752 | 0.511146 | 0.586837 | 0.012* | |
| C4 | 0.2289 (6) | 0.3927 (6) | 0.3507 (4) | 0.0074 (8) | |
| C5 | 0.2388 (6) | 0.5450 (6) | 0.2360 (5) | 0.0087 (8) | |
| O2 | 0.2500 (4) | 0.4783 (4) | 0.0937 (3) | 0.0098 (6) | |
| O3 | 0.2423 (5) | 0.7207 (4) | 0.2790 (3) | 0.0137 (6) | |
| O4 | 0.2886 (5) | −0.0428 (4) | 0.7039 (3) | 0.0149 (6) | |
| O5 | 0.2257 (4) | 0.2323 (4) | 0.8208 (3) | 0.0123 (6) |
| Ga1 | 0.0123 (2) | 0.0088 (2) | 0.0059 (2) | 0.00441 (17) | 0.00399 (16) | 0.00291 (15) |
| O1W | 0.0120 (14) | 0.0172 (16) | 0.0176 (15) | 0.0074 (13) | 0.0071 (12) | 0.0109 (12) |
| O1 | 0.0142 (14) | 0.0097 (14) | 0.0078 (14) | 0.0050 (12) | 0.0032 (11) | 0.0044 (11) |
| N1 | 0.0164 (17) | 0.0109 (16) | 0.0069 (16) | 0.0069 (14) | 0.0057 (13) | 0.0056 (13) |
| N2 | 0.0110 (17) | 0.0093 (16) | 0.0061 (15) | 0.0025 (13) | 0.0034 (13) | 0.0029 (12) |
| C1 | 0.0076 (19) | 0.014 (2) | 0.0075 (19) | 0.0009 (16) | 0.0010 (15) | 0.0034 (15) |
| C2 | 0.0073 (19) | 0.012 (2) | 0.0071 (19) | 0.0018 (16) | 0.0035 (15) | 0.0016 (15) |
| C3 | 0.011 (2) | 0.0117 (19) | 0.0100 (19) | 0.0053 (16) | 0.0060 (16) | 0.0018 (15) |
| C4 | 0.0066 (18) | 0.0077 (18) | 0.0084 (18) | 0.0020 (15) | 0.0034 (14) | 0.0024 (15) |
| C5 | 0.0071 (19) | 0.0087 (19) | 0.0112 (19) | 0.0040 (15) | 0.0015 (15) | 0.0018 (15) |
| O2 | 0.0158 (14) | 0.0064 (13) | 0.0086 (13) | 0.0043 (11) | 0.0048 (11) | 0.0022 (10) |
| O3 | 0.0205 (16) | 0.0120 (15) | 0.0110 (14) | 0.0084 (12) | 0.0036 (12) | 0.0033 (11) |
| O4 | 0.0203 (16) | 0.0171 (16) | 0.0125 (14) | 0.0100 (13) | 0.0076 (12) | 0.0072 (12) |
| O5 | 0.0182 (15) | 0.0139 (14) | 0.0052 (13) | 0.0050 (12) | 0.0036 (11) | 0.0028 (11) |
| Ga1—O1 | 1.903 (3) | N1—H1N | 0.8800 |
| Ga1—O5 | 1.932 (3) | N2—C4 | 1.326 (5) |
| Ga1—O1i | 1.974 (3) | C1—O4 | 1.224 (5) |
| Ga1—O2ii | 1.987 (3) | C1—O5 | 1.276 (5) |
| Ga1—O1W | 1.988 (3) | C1—C2 | 1.499 (5) |
| Ga1—N2ii | 2.112 (3) | C2—C3 | 1.369 (6) |
| Ga1—Ga1i | 2.9716 (10) | C3—C4 | 1.399 (5) |
| O1W—H1X | 0.943 (10) | C3—H3 | 0.9500 |
| O1W—H1Y | 0.939 (10) | C4—C5 | 1.487 (5) |
| O1—H1 | 0.77 (5) | C5—O3 | 1.225 (5) |
| N1—N2 | 1.333 (4) | C5—O2 | 1.284 (5) |
| N1—C2 | 1.355 (5) | ||
| O1—Ga1—O5 | 101.59 (12) | Ga1—O1—H1 | 118 (4) |
| O1—Ga1—O1i | 79.94 (13) | Ga1i—O1—H1 | 107 (4) |
| O5—Ga1—O1i | 93.13 (12) | N2—N1—C2 | 110.6 (3) |
| O1—Ga1—O2ii | 166.31 (11) | N2—N1—H1N | 124.7 |
| O5—Ga1—O2ii | 87.28 (11) | C2—N1—H1N | 124.7 |
| O1i—Ga1—O2ii | 89.26 (11) | C4—N2—N1 | 106.8 (3) |
| O1—Ga1—O1W | 99.60 (12) | C4—N2—Ga1iii | 112.3 (2) |
| O5—Ga1—O1W | 88.20 (12) | N1—N2—Ga1iii | 140.7 (3) |
| O1i—Ga1—O1W | 178.65 (12) | O4—C1—O5 | 129.1 (4) |
| O2ii—Ga1—O1W | 91.00 (11) | O4—C1—C2 | 118.2 (3) |
| O1—Ga1—N2ii | 93.94 (12) | O5—C1—C2 | 112.7 (3) |
| O5—Ga1—N2ii | 164.18 (12) | N1—C2—C3 | 107.5 (3) |
| O1i—Ga1—N2ii | 92.49 (12) | N1—C2—C1 | 119.5 (3) |
| O2ii—Ga1—N2ii | 78.02 (11) | C3—C2—C1 | 133.0 (4) |
| O1W—Ga1—N2ii | 86.27 (12) | C2—C3—C4 | 104.8 (3) |
| O1—Ga1—Ga1i | 40.86 (8) | C2—C3—H3 | 127.6 |
| O5—Ga1—Ga1i | 99.50 (8) | C4—C3—H3 | 127.6 |
| O1i—Ga1—Ga1i | 39.08 (8) | N2—C4—C3 | 110.3 (3) |
| O2ii—Ga1—Ga1i | 127.84 (8) | N2—C4—C5 | 115.1 (3) |
| O1W—Ga1—Ga1i | 140.45 (9) | C3—C4—C5 | 134.4 (3) |
| N2ii—Ga1—Ga1i | 94.18 (9) | O3—C5—O2 | 124.3 (4) |
| Ga1—O1W—H1X | 124 (2) | O3—C5—C4 | 121.2 (3) |
| Ga1—O1W—H1Y | 123 (2) | O2—C5—C4 | 114.5 (3) |
| H1X—O1W—H1Y | 110.8 (16) | C5—O2—Ga1iii | 118.6 (2) |
| Ga1—O1—Ga1i | 100.06 (13) | C1—O5—Ga1 | 129.9 (3) |
| C2—N1—N2—C4 | 0.2 (4) | N1—N2—C4—C5 | 175.1 (3) |
| C2—N1—N2—Ga1iii | −173.6 (3) | Ga1iii—N2—C4—C5 | −9.2 (4) |
| N2—N1—C2—C3 | 0.2 (4) | C2—C3—C4—N2 | 0.7 (4) |
| N2—N1—C2—C1 | −178.4 (3) | C2—C3—C4—C5 | −173.7 (4) |
| O4—C1—C2—N1 | 7.0 (5) | N2—C4—C5—O3 | −177.0 (3) |
| O5—C1—C2—N1 | −173.1 (3) | C3—C4—C5—O3 | −2.8 (7) |
| O4—C1—C2—C3 | −171.2 (4) | N2—C4—C5—O2 | 1.0 (5) |
| O5—C1—C2—C3 | 8.7 (6) | C3—C4—C5—O2 | 175.2 (4) |
| N1—C2—C3—C4 | −0.5 (4) | O3—C5—O2—Ga1iii | −173.3 (3) |
| C1—C2—C3—C4 | 177.8 (4) | C4—C5—O2—Ga1iii | 8.8 (4) |
| N1—N2—C4—C3 | −0.5 (4) | O4—C1—O5—Ga1 | −4.2 (6) |
| Ga1iii—N2—C4—C3 | 175.2 (2) | C2—C1—O5—Ga1 | 175.8 (2) |
| H··· | ||||
| O1 | 0.94 | 1.73 | 2.643 (4) | 164 |
| O1 | 0.94 | 1.89 | 2.803 (4) | 165 |
| O1—H1···O3vi | 0.77 | 1.99 | 2.751 (4) | 175 |
| N1—H1 | 0.88 | 1.96 | 2.773 (4) | 152 |