| Literature DB >> 31709074 |
Linh Duong Khanh1, My Hanh Trinh Thi1, Thuy Quynh Bui Thi1, Trung Vu Quoc1, Vuong Nguyen Thien2,3, Luc Van Meervelt4.
Abstract
In the title pyrazoline derivative, C16H16N2O3·H2O, the pyrazoline ring has an envelope conformation with the substituted sp 2 C atom on the flap. The pyrazoline ring makes angles of 86.73 (12) and 13.44 (12)° with the tris-ubstituted and disubstituted benzene rings, respectively. In the crystal structure, the mol-ecules are connected into chains running in the b-axis direction by O-H⋯N hydrogen bonding. Parallel chains inter-act through N-H⋯O hydrogen bonds and π-π stacking of the tris-ubstituted phenyl rings. The major contribution to the surface contacts are H⋯H contacts (44.3%) as concluded from a Hirshfeld surface analysis. © Duong Khanh et al. 2019.Entities:
Keywords: Hirshfeld analysis; crystal structure; hydrogen bonding; pyrazolines
Year: 2019 PMID: 31709074 PMCID: PMC6829711 DOI: 10.1107/S2056989019013379
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1A view of the molecular structure of 2, with atom labels and displacement ellipsoids drawn at the 50% probability level. H atoms are shown as small circles of arbitrary radii and the O—H⋯N interaction as a dotted blue line.
Figure 2Partial crystal packing of 2, showing the interactions of water molecule O22. O—H⋯N and O—H⋯O interactions are shown as blue and red dashed lines, respectively (see Table 1 ▸ for symmetry codes).
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N2—H2⋯O12i | 0.87 (2) | 2.36 (2) | 3.209 (2) | 167 (2) |
| O14—H14⋯N2ii | 0.91 (3) | 1.89 (3) | 2.760 (2) | 158 (3) |
| O21—H21⋯O22iii | 0.98 (4) | 1.66 (4) | 2.633 (3) | 169 (4) |
| O22—H22 | 0.91 (4) | 1.99 (4) | 2.891 (3) | 171 (3) |
| O22—H22 | 0.98 (4) | 1.84 (4) | 2.794 (3) | 166 (3) |
| C7—H7⋯O12v | 0.93 | 2.56 | 3.465 (2) | 165 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .
Figure 3Partial crystal packing of 2, showing the chain formation along the b axis by O—H⋯N interactions (blue dashed lines). Parallel chains are linked by N—H⋯O (red dashed lines) and π–π interactions (grey dashed lines; Cg1 is the centroid of the C6–C11 ring; see Table 1 ▸ for symmetry codes).
Figure 4Two views of the Hirshfeld surface mapped over d norm for 2 in the range −0.7348 to +1.5269 arbitrary units.
Figure 5Full two-dimensional fingerprint plots for 2, showing (a) all interactions, and delineated into (b) H⋯H, (c) C⋯H/H⋯C, (d) O⋯H/H⋯O, (e) N⋯H/H⋯N and (f) C⋯C interactions. The d i and d e values are the closest internal and external distances (in Å) from a given point on the Hirshfeld surface.
Enrichment ratios for 2
| Parameter | Ratio |
|---|---|
| H⋯H | 0.89 |
| C⋯H | 1.18 |
| O⋯H | 1.39 |
| N⋯H | 1.41 |
| C⋯C | 1.02 |
Figure 6Reaction scheme for the synthesis of compound 2.
Experimental details
| Crystal data | |
| Chemical formula | C16H16N2O3·H2O |
|
| 302.32 |
| Crystal system, space group | Orthorhombic, |
| Temperature (K) | 293 |
|
| 12.1452 (5), 8.1784 (3), 31.2738 (12) |
|
| 3106.4 (2) |
|
| 8 |
| Radiation type | Mo |
| μ (mm−1) | 0.09 |
| Crystal size (mm) | 0.5 × 0.2 × 0.05 |
| Data collection | |
| Diffractometer | Rigaku Oxford Diffraction SuperNova, Single source at offset/far, Eos |
| Absorption correction | Multi-scan ( |
|
| 0.697, 1.000 |
| No. of measured, independent and observed [ | 16817, 3172, 2241 |
|
| 0.039 |
| (sin θ/λ)max (Å−1) | 0.625 |
| Refinement | |
|
| 0.050, 0.115, 1.03 |
| No. of reflections | 3172 |
| No. of parameters | 220 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.18, −0.19 |
Computer programs: CrysAlis PRO (Rigaku OD, 2018 ▸), SHELXT2014 (Sheldrick, 2015a ▸), SHELXL2016 (Sheldrick, 2015b ▸) and OLEX2 (Dolomanov et al., 2009 ▸).
| C16H16N2O3·H2O | |
| Mo | |
| Orthorhombic, | Cell parameters from 4406 reflections |
| θ = 3.1–24.8° | |
| µ = 0.09 mm−1 | |
| Plate, yellow | |
| 0.5 × 0.2 × 0.05 mm | |
| Rigaku Oxford Diffraction SuperNova, Single source at offset/far, Eos diffractometer | 3172 independent reflections |
| Radiation source: micro-focus sealed X-ray tube, SuperNova (Mo) X-ray Source | 2241 reflections with |
| Mirror monochromator | |
| Detector resolution: 15.9631 pixels mm-1 | θmax = 26.4°, θmin = 2.6° |
| ω scans | |
| Absorption correction: multi-scan (CrysAlis PRO; Rigaku OD, 2018) | |
| 16817 measured reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 3172 reflections | Δρmax = 0.18 e Å−3 |
| 220 parameters | Δρmin = −0.19 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| O12 | 0.67375 (11) | 0.32986 (16) | 0.53007 (4) | 0.0374 (4) | |
| O14 | 0.56063 (13) | 0.13497 (17) | 0.48138 (5) | 0.0433 (4) | |
| N2 | 0.51402 (15) | 0.8855 (2) | 0.42476 (5) | 0.0347 (4) | |
| N1 | 0.49999 (14) | 0.9151 (2) | 0.38046 (5) | 0.0384 (4) | |
| O22 | 0.29208 (18) | 0.8202 (3) | 0.35137 (6) | 0.0677 (5) | |
| O21 | 0.64259 (19) | 1.0090 (3) | 0.18438 (6) | 0.0803 (7) | |
| C8 | 0.63357 (15) | 0.3973 (2) | 0.49290 (6) | 0.0287 (4) | |
| C9 | 0.57465 (16) | 0.2905 (2) | 0.46661 (6) | 0.0306 (4) | |
| C7 | 0.64750 (15) | 0.5586 (2) | 0.48084 (6) | 0.0298 (4) | |
| H7 | 0.686502 | 0.629245 | 0.498546 | 0.036* | |
| C6 | 0.60392 (16) | 0.6168 (2) | 0.44254 (6) | 0.0312 (4) | |
| C11 | 0.54679 (16) | 0.5094 (2) | 0.41631 (6) | 0.0346 (5) | |
| H11 | 0.517910 | 0.546425 | 0.390526 | 0.042* | |
| C3 | 0.61976 (16) | 0.7953 (2) | 0.43154 (7) | 0.0348 (5) | |
| H3 | 0.660239 | 0.848056 | 0.454879 | 0.042* | |
| C10 | 0.53234 (17) | 0.3472 (2) | 0.42823 (6) | 0.0354 (5) | |
| H10 | 0.494061 | 0.276326 | 0.410349 | 0.042* | |
| C5 | 0.59163 (17) | 0.8914 (2) | 0.36073 (7) | 0.0376 (5) | |
| C15 | 0.60588 (19) | 0.9252 (3) | 0.31515 (7) | 0.0431 (5) | |
| C4 | 0.68056 (18) | 0.8284 (3) | 0.38953 (7) | 0.0450 (6) | |
| H4A | 0.738080 | 0.909351 | 0.393418 | 0.054* | |
| H4B | 0.712858 | 0.728975 | 0.378196 | 0.054* | |
| C13 | 0.7444 (2) | 0.4300 (3) | 0.55573 (7) | 0.0482 (6) | |
| H13A | 0.803642 | 0.471013 | 0.538454 | 0.072* | |
| H13B | 0.773932 | 0.366112 | 0.578791 | 0.072* | |
| H13C | 0.703076 | 0.520021 | 0.567146 | 0.072* | |
| C16 | 0.6949 (2) | 0.8613 (3) | 0.29308 (8) | 0.0574 (7) | |
| H16 | 0.746563 | 0.798987 | 0.307775 | 0.069* | |
| C18 | 0.6333 (2) | 0.9799 (3) | 0.22753 (8) | 0.0597 (7) | |
| C20 | 0.5313 (2) | 1.0207 (3) | 0.29215 (8) | 0.0615 (7) | |
| H20 | 0.471444 | 1.067128 | 0.306189 | 0.074* | |
| C17 | 0.7088 (2) | 0.8877 (3) | 0.24971 (8) | 0.0654 (8) | |
| H17 | 0.769099 | 0.843147 | 0.235584 | 0.079* | |
| C19 | 0.5450 (2) | 1.0475 (4) | 0.24884 (8) | 0.0723 (9) | |
| H19 | 0.494359 | 1.111272 | 0.234017 | 0.087* | |
| H2 | 0.4564 (18) | 0.832 (3) | 0.4332 (7) | 0.042 (6)* | |
| H22A | 0.317 (3) | 0.729 (5) | 0.3380 (11) | 0.109 (14)* | |
| H22B | 0.364 (3) | 0.867 (4) | 0.3581 (10) | 0.106 (12)* | |
| H14 | 0.533 (2) | 0.072 (4) | 0.4599 (9) | 0.082 (10)* | |
| H21 | 0.705 (3) | 0.949 (5) | 0.1719 (12) | 0.130 (14)* |
| O12 | 0.0429 (8) | 0.0318 (7) | 0.0375 (8) | −0.0015 (6) | −0.0074 (6) | 0.0036 (6) |
| O14 | 0.0619 (10) | 0.0250 (8) | 0.0429 (9) | −0.0082 (7) | −0.0049 (8) | 0.0019 (7) |
| N2 | 0.0417 (10) | 0.0297 (9) | 0.0329 (9) | 0.0003 (8) | −0.0026 (8) | 0.0031 (8) |
| N1 | 0.0431 (10) | 0.0380 (10) | 0.0340 (9) | 0.0041 (8) | −0.0045 (8) | 0.0021 (8) |
| O22 | 0.0638 (13) | 0.0794 (14) | 0.0599 (12) | 0.0010 (11) | −0.0157 (10) | −0.0056 (11) |
| O21 | 0.0997 (17) | 0.0965 (16) | 0.0446 (11) | 0.0282 (13) | 0.0183 (11) | 0.0222 (11) |
| C8 | 0.0293 (10) | 0.0280 (10) | 0.0289 (10) | 0.0025 (8) | 0.0020 (8) | 0.0011 (8) |
| C9 | 0.0316 (10) | 0.0238 (9) | 0.0365 (11) | 0.0002 (8) | 0.0038 (9) | 0.0004 (8) |
| C7 | 0.0300 (10) | 0.0264 (10) | 0.0331 (11) | −0.0013 (8) | −0.0015 (8) | −0.0024 (8) |
| C6 | 0.0329 (10) | 0.0271 (10) | 0.0336 (11) | −0.0006 (8) | 0.0003 (8) | 0.0001 (9) |
| C11 | 0.0368 (11) | 0.0342 (11) | 0.0329 (11) | 0.0002 (9) | −0.0044 (9) | 0.0028 (9) |
| C3 | 0.0360 (11) | 0.0297 (10) | 0.0387 (12) | −0.0042 (8) | −0.0078 (9) | 0.0049 (9) |
| C10 | 0.0400 (11) | 0.0308 (11) | 0.0353 (11) | −0.0049 (9) | −0.0016 (9) | −0.0054 (9) |
| C5 | 0.0411 (12) | 0.0316 (11) | 0.0402 (12) | −0.0015 (9) | −0.0009 (10) | 0.0040 (9) |
| C15 | 0.0464 (13) | 0.0430 (12) | 0.0400 (12) | 0.0030 (10) | 0.0018 (10) | 0.0069 (10) |
| C4 | 0.0384 (12) | 0.0435 (12) | 0.0531 (14) | −0.0057 (9) | −0.0008 (10) | 0.0162 (11) |
| C13 | 0.0535 (14) | 0.0481 (13) | 0.0430 (13) | −0.0083 (11) | −0.0160 (11) | 0.0040 (11) |
| C16 | 0.0575 (16) | 0.0672 (17) | 0.0476 (14) | 0.0172 (13) | 0.0071 (12) | 0.0136 (13) |
| C18 | 0.0713 (18) | 0.0653 (17) | 0.0426 (14) | 0.0109 (14) | 0.0114 (13) | 0.0133 (13) |
| C20 | 0.0671 (17) | 0.0702 (18) | 0.0473 (14) | 0.0255 (14) | 0.0129 (13) | 0.0154 (13) |
| C17 | 0.0643 (17) | 0.0809 (19) | 0.0511 (15) | 0.0235 (15) | 0.0170 (13) | 0.0109 (15) |
| C19 | 0.079 (2) | 0.089 (2) | 0.0490 (15) | 0.0365 (17) | 0.0091 (14) | 0.0240 (15) |
| O12—C8 | 1.376 (2) | C3—H3 | 0.9800 |
| O12—C13 | 1.432 (2) | C3—C4 | 1.531 (3) |
| O14—C9 | 1.364 (2) | C10—H10 | 0.9300 |
| O14—H14 | 0.91 (3) | C5—C15 | 1.462 (3) |
| N2—N1 | 1.417 (2) | C5—C4 | 1.498 (3) |
| N2—C3 | 1.496 (3) | C15—C16 | 1.385 (3) |
| N2—H2 | 0.87 (2) | C15—C20 | 1.396 (3) |
| N1—C5 | 1.287 (3) | C4—H4A | 0.9700 |
| O22—H22A | 0.91 (4) | C4—H4B | 0.9700 |
| O22—H22B | 0.98 (4) | C13—H13A | 0.9600 |
| O21—C18 | 1.375 (3) | C13—H13B | 0.9600 |
| O21—H21 | 0.98 (4) | C13—H13C | 0.9600 |
| C8—C9 | 1.397 (3) | C16—H16 | 0.9300 |
| C8—C7 | 1.383 (3) | C16—C17 | 1.384 (3) |
| C9—C10 | 1.386 (3) | C18—C17 | 1.375 (3) |
| C7—H7 | 0.9300 | C18—C19 | 1.379 (3) |
| C7—C6 | 1.393 (3) | C20—H20 | 0.9300 |
| C6—C11 | 1.387 (3) | C20—C19 | 1.382 (3) |
| C6—C3 | 1.513 (3) | C17—H17 | 0.9300 |
| C11—H11 | 0.9300 | C19—H19 | 0.9300 |
| C11—C10 | 1.389 (3) | ||
| C8—O12—C13 | 117.18 (15) | N1—C5—C4 | 112.78 (18) |
| C9—O14—H14 | 108.7 (18) | C15—C5—C4 | 124.46 (19) |
| N1—N2—C3 | 109.04 (16) | C16—C15—C5 | 120.5 (2) |
| N1—N2—H2 | 106.6 (14) | C16—C15—C20 | 117.4 (2) |
| C3—N2—H2 | 113.6 (14) | C20—C15—C5 | 122.1 (2) |
| C5—N1—N2 | 109.81 (17) | C3—C4—H4A | 111.1 |
| H22A—O22—H22B | 97 (3) | C3—C4—H4B | 111.1 |
| C18—O21—H21 | 112 (2) | C5—C4—C3 | 103.23 (17) |
| O12—C8—C9 | 115.37 (16) | C5—C4—H4A | 111.1 |
| O12—C8—C7 | 124.70 (17) | C5—C4—H4B | 111.1 |
| C7—C8—C9 | 119.93 (17) | H4A—C4—H4B | 109.1 |
| O14—C9—C8 | 116.60 (17) | O12—C13—H13A | 109.5 |
| O14—C9—C10 | 124.02 (18) | O12—C13—H13B | 109.5 |
| C10—C9—C8 | 119.36 (17) | O12—C13—H13C | 109.5 |
| C8—C7—H7 | 119.5 | H13A—C13—H13B | 109.5 |
| C8—C7—C6 | 120.92 (18) | H13A—C13—H13C | 109.5 |
| C6—C7—H7 | 119.5 | H13B—C13—H13C | 109.5 |
| C7—C6—C3 | 118.49 (17) | C15—C16—H16 | 119.2 |
| C11—C6—C7 | 118.83 (17) | C17—C16—C15 | 121.7 (2) |
| C11—C6—C3 | 122.68 (17) | C17—C16—H16 | 119.2 |
| C6—C11—H11 | 119.7 | O21—C18—C17 | 122.4 (2) |
| C6—C11—C10 | 120.59 (18) | O21—C18—C19 | 118.0 (2) |
| C10—C11—H11 | 119.7 | C17—C18—C19 | 119.7 (2) |
| N2—C3—C6 | 113.52 (16) | C15—C20—H20 | 119.5 |
| N2—C3—H3 | 108.6 | C19—C20—C15 | 121.0 (2) |
| N2—C3—C4 | 101.83 (15) | C19—C20—H20 | 119.5 |
| C6—C3—H3 | 108.6 | C16—C17—H17 | 120.0 |
| C6—C3—C4 | 115.28 (17) | C18—C17—C16 | 119.9 (2) |
| C4—C3—H3 | 108.6 | C18—C17—H17 | 120.0 |
| C9—C10—C11 | 120.36 (18) | C18—C19—C20 | 120.3 (2) |
| C9—C10—H10 | 119.8 | C18—C19—H19 | 119.9 |
| C11—C10—H10 | 119.8 | C20—C19—H19 | 119.9 |
| N1—C5—C15 | 122.76 (19) | ||
| O12—C8—C9—O14 | 2.2 (2) | C7—C6—C3—N2 | −121.91 (19) |
| O12—C8—C9—C10 | −179.16 (17) | C7—C6—C3—C4 | 121.2 (2) |
| O12—C8—C7—C6 | 180.00 (17) | C6—C11—C10—C9 | 0.2 (3) |
| O14—C9—C10—C11 | 177.47 (18) | C6—C3—C4—C5 | 108.50 (19) |
| N2—N1—C5—C15 | −174.82 (18) | C11—C6—C3—N2 | 57.3 (3) |
| N2—N1—C5—C4 | 4.4 (2) | C11—C6—C3—C4 | −59.6 (3) |
| N2—C3—C4—C5 | −14.9 (2) | C3—N2—N1—C5 | −15.0 (2) |
| N1—N2—C3—C6 | −106.21 (19) | C3—C6—C11—C10 | −178.59 (18) |
| N1—N2—C3—C4 | 18.3 (2) | C5—C15—C16—C17 | 178.3 (2) |
| N1—C5—C15—C16 | −163.9 (2) | C5—C15—C20—C19 | −178.3 (3) |
| N1—C5—C15—C20 | 15.7 (3) | C15—C5—C4—C3 | −173.42 (19) |
| N1—C5—C4—C3 | 7.3 (2) | C15—C16—C17—C18 | 0.2 (4) |
| O21—C18—C17—C16 | −179.5 (3) | C15—C20—C19—C18 | −0.1 (5) |
| O21—C18—C19—C20 | 179.4 (3) | C4—C5—C15—C16 | 17.0 (3) |
| C8—C9—C10—C11 | −1.1 (3) | C4—C5—C15—C20 | −163.5 (2) |
| C8—C7—C6—C11 | −0.6 (3) | C13—O12—C8—C9 | 173.54 (18) |
| C8—C7—C6—C3 | 178.69 (17) | C13—O12—C8—C7 | −6.8 (3) |
| C9—C8—C7—C6 | −0.3 (3) | C16—C15—C20—C19 | 1.2 (4) |
| C7—C8—C9—O14 | −177.51 (17) | C20—C15—C16—C17 | −1.3 (4) |
| C7—C8—C9—C10 | 1.1 (3) | C17—C18—C19—C20 | −1.0 (5) |
| C7—C6—C11—C10 | 0.6 (3) | C19—C18—C17—C16 | 0.9 (5) |
| H··· | ||||
| N2—H2···O12i | 0.87 (2) | 2.36 (2) | 3.209 (2) | 167 (2) |
| O14—H14···N2ii | 0.91 (3) | 1.89 (3) | 2.760 (2) | 158 (3) |
| O21—H21···O22iii | 0.98 (4) | 1.66 (4) | 2.633 (3) | 169 (4) |
| O22—H22 | 0.91 (4) | 1.99 (4) | 2.891 (3) | 171 (3) |
| O22—H22 | 0.98 (4) | 1.84 (4) | 2.794 (3) | 166 (3) |
| C7—H7···O12v | 0.93 | 2.56 | 3.465 (2) | 165 |