Literature DB >> 31704292

Nature abhors a paywall: How open science can realize the potential of naturalistic stimuli.

Elizabeth DuPre1, Michael Hanke2, Jean-Baptiste Poline3.   

Abstract

Naturalistic stimuli show significant potential to inform behavioral, cognitive, and clinical neuroscience. To date, this impact is still limited by the relative inaccessibility of both generated neuroimaging data as well as the supporting naturalistic stimuli. In this perspective, we highlight currently available naturalistic datasets and technical solutions such as DataLad that continue to advance our ability to share this data. We also review scientific and sociological challenges in selecting naturalistic stimuli for reproducible research. Overall, we encourage researchers to share their naturalistic datasets to the full extent possible under local copyright law.
Copyright © 2019 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Data sharing; Naturalistic stimuli; Open science

Mesh:

Year:  2019        PMID: 31704292      PMCID: PMC7198323          DOI: 10.1016/j.neuroimage.2019.116330

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  29 in total

1.  Accessing Real-Life Episodic Information from Minutes versus Hours Earlier Modulates Hippocampal and High-Order Cortical Dynamics.

Authors:  J Chen; C J Honey; E Simony; M J Arcaro; K A Norman; U Hasson
Journal:  Cereb Cortex       Date:  2015-08-03       Impact factor: 5.357

2.  Toward discovery science of human brain function.

Authors:  Bharat B Biswal; Maarten Mennes; Xi-Nian Zuo; Suril Gohel; Clare Kelly; Steve M Smith; Christian F Beckmann; Jonathan S Adelstein; Randy L Buckner; Stan Colcombe; Anne-Marie Dogonowski; Monique Ernst; Damien Fair; Michelle Hampson; Matthew J Hoptman; James S Hyde; Vesa J Kiviniemi; Rolf Kötter; Shi-Jiang Li; Ching-Po Lin; Mark J Lowe; Clare Mackay; David J Madden; Kristoffer H Madsen; Daniel S Margulies; Helen S Mayberg; Katie McMahon; Christopher S Monk; Stewart H Mostofsky; Bonnie J Nagel; James J Pekar; Scott J Peltier; Steven E Petersen; Valentin Riedl; Serge A R B Rombouts; Bart Rypma; Bradley L Schlaggar; Sein Schmidt; Rachael D Seidler; Greg J Siegle; Christian Sorg; Gao-Jun Teng; Juha Veijola; Arno Villringer; Martin Walter; Lihong Wang; Xu-Chu Weng; Susan Whitfield-Gabrieli; Peter Williamson; Christian Windischberger; Yu-Feng Zang; Hong-Ying Zhang; F Xavier Castellanos; Michael P Milham
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-22       Impact factor: 11.205

3.  The Healthy Brain Network Serial Scanning Initiative: a resource for evaluating inter-individual differences and their reliabilities across scan conditions and sessions.

Authors:  David O'Connor; Natan Vega Potler; Meagan Kovacs; Ting Xu; Lei Ai; John Pellman; Tamara Vanderwal; Lucas C Parra; Samantha Cohen; Satrajit Ghosh; Jasmine Escalera; Natalie Grant-Villegas; Yael Osman; Anastasia Bui; R Cameron Craddock; Michael P Milham
Journal:  Gigascience       Date:  2017-02-01       Impact factor: 6.524

4.  Representation of Real-World Event Schemas during Narrative Perception.

Authors:  Christopher Baldassano; Uri Hasson; Kenneth A Norman
Journal:  J Neurosci       Date:  2018-09-24       Impact factor: 6.167

5.  Learning Naturalistic Temporal Structure in the Posterior Medial Network.

Authors:  Mariam Aly; Janice Chen; Nicholas B Turk-Browne; Uri Hasson
Journal:  J Cogn Neurosci       Date:  2018-07-13       Impact factor: 3.225

6.  Inferring cortical function in the mouse visual system through large-scale systems neuroscience.

Authors:  Michael Hawrylycz; Costas Anastassiou; Anton Arkhipov; Jim Berg; Michael Buice; Nicholas Cain; Nathan W Gouwens; Sergey Gratiy; Ramakrishnan Iyer; Jung Hoon Lee; Stefan Mihalas; Catalin Mitelut; Shawn Olsen; R Clay Reid; Corinne Teeter; Saskia de Vries; Jack Waters; Hongkui Zeng; Christof Koch
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-05       Impact factor: 11.205

7.  Simultaneously uncovering the patterns of brain regions involved in different story reading subprocesses.

Authors:  Leila Wehbe; Brian Murphy; Partha Talukdar; Alona Fyshe; Aaditya Ramdas; Tom Mitchell
Journal:  PLoS One       Date:  2014-11-26       Impact factor: 3.240

8.  The Cambridge Centre for Ageing and Neuroscience (Cam-CAN) data repository: Structural and functional MRI, MEG, and cognitive data from a cross-sectional adult lifespan sample.

Authors:  Jason R Taylor; Nitin Williams; Rhodri Cusack; Tibor Auer; Meredith A Shafto; Marie Dixon; Lorraine K Tyler; Richard N Henson
Journal:  Neuroimage       Date:  2015-09-12       Impact factor: 6.556

9.  An Open Resource for Non-human Primate Imaging.

Authors:  Michael P Milham; Lei Ai; Bonhwang Koo; Ting Xu; Céline Amiez; Fabien Balezeau; Mark G Baxter; Erwin L A Blezer; Thomas Brochier; Aihua Chen; Paula L Croxson; Christienne G Damatac; Stanislas Dehaene; Stefan Everling; Damian A Fair; Lazar Fleysher; Winrich Freiwald; Sean Froudist-Walsh; Timothy D Griffiths; Carole Guedj; Fadila Hadj-Bouziane; Suliann Ben Hamed; Noam Harel; Bassem Hiba; Bechir Jarraya; Benjamin Jung; Sabine Kastner; P Christiaan Klink; Sze Chai Kwok; Kevin N Laland; David A Leopold; Patrik Lindenfors; Rogier B Mars; Ravi S Menon; Adam Messinger; Martine Meunier; Kelvin Mok; John H Morrison; Jennifer Nacef; Jamie Nagy; Michael Ortiz Rios; Christopher I Petkov; Mark Pinsk; Colline Poirier; Emmanuel Procyk; Reza Rajimehr; Simon M Reader; Pieter R Roelfsema; David A Rudko; Matthew F S Rushworth; Brian E Russ; Jerome Sallet; Michael Christoph Schmid; Caspar M Schwiedrzik; Jakob Seidlitz; Julien Sein; Amir Shmuel; Elinor L Sullivan; Leslie Ungerleider; Alexander Thiele; Orlin S Todorov; Doris Tsao; Zheng Wang; Charles R E Wilson; Essa Yacoub; Frank Q Ye; Wilbert Zarco; Yong-di Zhou; Daniel S Margulies; Charles E Schroeder
Journal:  Neuron       Date:  2018-09-27       Impact factor: 17.173

10.  The autism brain imaging data exchange: towards a large-scale evaluation of the intrinsic brain architecture in autism.

Authors:  A Di Martino; C-G Yan; Q Li; E Denio; F X Castellanos; K Alaerts; J S Anderson; M Assaf; S Y Bookheimer; M Dapretto; B Deen; S Delmonte; I Dinstein; B Ertl-Wagner; D A Fair; L Gallagher; D P Kennedy; C L Keown; C Keysers; J E Lainhart; C Lord; B Luna; V Menon; N J Minshew; C S Monk; S Mueller; R-A Müller; M B Nebel; J T Nigg; K O'Hearn; K A Pelphrey; S J Peltier; J D Rudie; S Sunaert; M Thioux; J M Tyszka; L Q Uddin; J S Verhoeven; N Wenderoth; J L Wiggins; S H Mostofsky; M P Milham
Journal:  Mol Psychiatry       Date:  2013-06-18       Impact factor: 15.992

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  7 in total

1.  Naturalistic Stimuli: A Paradigm for Multi-Scale Functional Characterization of the Human Brain.

Authors:  Yizhen Zhang; Jung-Hoon Kim; David Brang; Zhongming Liu
Journal:  Curr Opin Biomed Eng       Date:  2021-06-02

2.  A naturalistic neuroimaging database for understanding the brain using ecological stimuli.

Authors:  Sarah Aliko; Jiawen Huang; Florin Gheorghiu; Stefanie Meliss; Jeremy I Skipper
Journal:  Sci Data       Date:  2020-10-13       Impact factor: 6.444

3.  Scan Once, Analyse Many: Using Large Open-Access Neuroimaging Datasets to Understand the Brain.

Authors:  Christopher R Madan
Journal:  Neuroinformatics       Date:  2021-05-11

4.  The "Narratives" fMRI dataset for evaluating models of naturalistic language comprehension.

Authors:  Samuel A Nastase; Yun-Fei Liu; Hanna Hillman; Asieh Zadbood; Liat Hasenfratz; Neggin Keshavarzian; Janice Chen; Christopher J Honey; Yaara Yeshurun; Mor Regev; Mai Nguyen; Claire H C Chang; Christopher Baldassano; Olga Lositsky; Erez Simony; Michael A Chow; Yuan Chang Leong; Paula P Brooks; Emily Micciche; Gina Choe; Ariel Goldstein; Tamara Vanderwal; Yaroslav O Halchenko; Kenneth A Norman; Uri Hasson
Journal:  Sci Data       Date:  2021-09-28       Impact factor: 8.501

5.  Neuroscout, a unified platform for generalizable and reproducible fMRI research.

Authors:  Alejandro de la Vega; Roberta Rocca; Ross W Blair; Christopher J Markiewicz; Jeff Mentch; James D Kent; Peer Herholz; Satrajit S Ghosh; Russell A Poldrack; Tal Yarkoni
Journal:  Elife       Date:  2022-08-30       Impact factor: 8.713

Review 6.  Naturalistic Stimuli in Affective Neuroimaging: A Review.

Authors:  Heini Saarimäki
Journal:  Front Hum Neurosci       Date:  2021-06-17       Impact factor: 3.169

7.  An fMRI dataset in response to "The Grand Budapest Hotel", a socially-rich, naturalistic movie.

Authors:  Matteo Visconti di Oleggio Castello; Vassiki Chauhan; Guo Jiahui; M Ida Gobbini
Journal:  Sci Data       Date:  2020-11-11       Impact factor: 6.444

  7 in total

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