| Literature DB >> 31703329 |
Jin Han1,2, Yeongseon Ji1,2, Kumju Youn1, GyuTae Lim3,4, Jinhyuk Lee3,4, Dong Hyun Kim5,6, Mira Jun1,2,6.
Abstract
One of the major neurodegenerative features of Alzheimer's disease (AD) is the presence of neurotoxic amyloid plaques composed of amyloid beta peptide (Aβ). β-Secretase (BACE1) and acetylcholinesterase (AChE), which promote Aβ fibril formation, have become attractive therapeutic targets for AD. P-glycoprotein (P-gp), the major efflux pump of the blood-brain barrier (BBB), plays a critical role in limiting therapeutic molecules. In pursuit of discovering a natural anti-AD candidate, the bioactivity, physicochemical, drug-likeness, and molecular docking properties of baicalein, a major compound from Scutellaria baicalensis, was investigated. Baicalein exhibited strong BACE1 and AChE inhibitory properties (IC50 23.71 ± 1.91 µM and 45.95 ± 3.44 µM, respectively) and reacted in non-competitive and competitive manners with substrates, respectively. in Silico docking analysis was in full agreement with the in vitro results, demonstrating that the compound exhibited powerful binding interaction with target enzymes. Particularly, three continuous hydroxyl groups on the A ring demonstrated strong H-bond binding properties. It is also noteworthy that baicalein complied with all requirements of Lipinski's rule of five by its optimal physicochemical properties for both oral bioavailability and blood-brain barrier permeability. Overall, the present study strongly demonstrated the possibility of baicalein having in vivo pharmacological efficacy for specific targets in the prevention and/or treatment of AD.Entities:
Keywords: Alzheimer’s disease; Aβ; BACE1; Lipinski’s rules; baicalein; docking analysis
Mesh:
Substances:
Year: 2019 PMID: 31703329 PMCID: PMC6893645 DOI: 10.3390/nu11112694
Source DB: PubMed Journal: Nutrients ISSN: 2072-6643 Impact factor: 5.717
Figure 1The chemical structure of baicalein.
BACE1 and AChE inhibitory activities and kinetic analysis of baicalein.
| Compounds | BACE1 | AChE | ||||
|---|---|---|---|---|---|---|
| IC50 1 | Ki Value 2 | Inhibition Type 3 | IC50 | Ki Value | Inhibition Type | |
| Baicalein | 23.71 ± 1.91 | 27.6 | Non-competitive | 45.95 ± 3.44 | 35.9 | Competitive |
| Resveratrol 4 | 15.04 ± 0.87 | |||||
| Galantamine 5 | 1.30 ± 0.01 | |||||
1 The 50% inhibition concentration (IC50, µM) is expressed as mean ± standard deviation (SD) of triplicate experiments. 2 Inhibition constants (Ki, µM) were determined using a Dixon plot. 3 Inhibition modes were determined using Dixon and Lineweaver–Burk plots. 4 Resveratrol and 5 Galantamine were used as positive controls for the BACE1 and AChE assays, respectively.
Figure 2Dixon and Lineweaver–Burk plots for the inhibition of BACE1 (a–c) and AChE (d–f) by baicalein. Dixon plot of BACE1 inhibition by baicalein in the presence of different substrate concentrations: 250 nM (∆), 500 nM (○), and 750 nM (□) (a). Dixon plot of AChE inhibition by baicalein in the presence of different substrate concentrations: 250 µM (∆), 500 µM (○), and 750 µM (□) (d). Lineweaver–Burk plot was analyzed in the presence of different inhibitor concentrations: 0.3 µM (○), 3 µM (□), 10 µM (◊), and 30 µM (∆) (b); and 0.3 µM (○), 3 µM (□), 50 µM (◊), and 100 µM (∆) (e). Km values as a function of the concentrations of baicalein (Inset) Dependence of the values of Vmax on the concentration of baicalein (c,f).
Inhibitory activities (%) 1,2 of baicalein against α-secretase (TACE) and other serine protease.
| Baicalein (μM) | TACE | Trypsin | Chymotrypsin | Elastase |
|---|---|---|---|---|
| 50 | 8.31 ± 0.89 | 3.40 ± 0.76 | 8.42 ± 0.76 | 10.29 ± 1.04 |
| 100 | 9.45 ± 0.71 | −6.95 ± 0.87 | 4.48 ± 0.76 | 9.00 ± 0.45 |
1 The inhibition activity (%) of baicalein against TACE, trypsin, chymotrypsin, and elastase is expressed as mean ± SD of independent triplicate experiments. 2 Comparison of concentration level of baicalein is not significantly different at p < 0.05.
Molecular interaction of BACE1, AChE, and P-glycoprotein (P-gp) active sites with its ligand (Baicalein).
| Enzymes | Lowest Energy (Kcal/moL) | No. of H-Bond 1 | Residues | Bond Distance (Å) | Van der Waals Interacting Residues |
|---|---|---|---|---|---|
| BACE1 | −8.60 | 6 | Ser35 | 3.15 | Val69, Tyr71, Trp76, Phe108, Ile118, Ala127, Arg128 |
| Ser36 | 3.27 | ||||
| Asn37 | 2.85 and 2.88 | ||||
| Ile126 | 2.66 and 2.89 | ||||
| AChE | −8.70 | 3 | Glu202 | 2.88 and 2.94 | Tyr72, Asp74, Trp86, Asn87, Gly120, Gly121, Tyr124, Ser125, Ser203, Tyr337, Gly448 |
| His447 | 2.96 | ||||
| P-gp | −8.40 | 3 | Ser975 | 3.08 and 3.33 | Met68, Phe71, Phe332, Phe724, Phe728, Leu971, Phe974, Val978 |
| Ser725 | 2.85 |
1 The number of hydrogen bonds from the enzyme-inhibitor complex were determined with the Autodock Vina.
Figure 3Docking simulation of the structure for BACE1, AChE, and P-gp with baicalein. The best docking poses between BACE1, AChE, and P-gp and baicalein (a,d,g). View of the binding site magnified from baicalein (b,e,h). 2D ligand interaction diagrams of BACE1, AChE, and P-gp inhibition by baicalein (c,f,i). Green dotted lines indicate H-bonds. Non-ligand residues involved in hydrophobic interactions are marked with open spokes. Atoms are colored as follows; carbon atoms in black, nitrogen atoms in blue, and oxygen atoms in red.
In Silico drug-likeness property through Lipinski’s rule.
| Compounds | No. of Violations | MW (g/moL) | H-Bond Acceptor | H-Bond Donor | Log Po/w 1 | TPSA 2 (Å2) | No. of rotb 3 |
|---|---|---|---|---|---|---|---|
| Baicalein | 0 | 270.24 | 5 | 3 | 2.682 | 90.89 | 1 |
1 Log Po/w octanol/water partition coefficient 2 TPSA topological polar surface area 3 No. of rotb number of rotatable bonds.