| Literature DB >> 31695449 |
Zhou Zheng1, Li Liu1, Xiaofei Shen1, Jingyi Yu1, Lijiang Chen1, Lingling Zhan1, Han Chen1, Chunchan Lin1, Ye Jiang1, Hong Xia1, Liangxing Wang2, Fangyou Yu1,3.
Abstract
PURPOSE: The resistance of N. gonorrhoeae to antimicrobial agents has been increasing year by year due to the overuse of antibiotics. The primary aims of the present study were to investigate the molecular characteristics of the clinical isolates of Neisseria gonorrhoeae and the resistance to azithromycin in a Chinese tertiary hospital.Entities:
Keywords: MLST; NG-MAST; Neisseria gonorrhoeae; antimicrobial resistance; azithromycin
Year: 2019 PMID: 31695449 PMCID: PMC6815782 DOI: 10.2147/IDR.S221109
Source DB: PubMed Journal: Infect Drug Resist ISSN: 1178-6973 Impact factor: 4.003
The Resistance Gene Primer Sequences And Target Fragment Sizes
| Designation | PCR Primer Sequence (5′ →3′) | Product Size (bp) | Annealing Temperature (°C) | |
|---|---|---|---|---|
| F | GCCAATCAACAGGCATTCTTA | 367 | 50 | |
| R | GTTGGAACAACGCGTCAAAC | |||
| F | GCACGCATCGCCTTAG | 842 | 48 | |
| R | AGTTGTCCATCATTATCCC | |||
| F | CAGCGATGTTGTAGTTCGT | 482 | 60 | |
| R | ACTCAAGTAATCTTGGCGC | |||
| F | TCAGCGACAATATGGTTGGT | 468 | 55 | |
| R | AGCCCAGTCTTTAGTTACC | |||
| allele 1 | R | TCAGAATGCCACAGCTTACAAACT | 2054 | 68 |
| allele 2 | R | GCGACCATACCAAACACCCACAGG | 2240 | 66 |
| allele 3 | R | GATCCCGTTGCAGTGAAGAAAGTC | 2217 | 66 |
| allele 4 | R | AACAGACTTACTATCCCATTCAGC | 1847 | 68 |
| Downstream | R2 | TTCGTCCACTCCGGTCCTCTCGTA | 712 | 59 |
| Upstream | F | ACGAATGGCGTAACGATGGCCACA | ||
Characterization And Molecular Typing Results Of Clinical Isolates Of Neisseria gonorrhoeae
| Group | Strain no. (Years) | CRO MIC (µg/mL)c | AZM MIC (µg/mL)c | MLST ST | NG-MAST ST | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AZM-R (n=13) | 10 (2014) | 0.064 | 1 | YES | A deletion | No mutation | No mutation | No mutation | No mutation | NF | NF1 | 866 | 135 |
| 15 (2014) | 0.064 | >256 | YES | A deletion | No mutation | No mutation | No mutation | A→G, alleles 1, 2, 3, and 4 | 10,899 | 1866 | 581 | 33 | |
| 16 (2014) | 0.064 | >256 | YES | A deletion | G45D | No mutation | No mutation | A→G, alleles 1, and 2 | 10,899 | 1866 | 581 | 33 | |
| 49 (2016) | 0.064 | 4 | YES | A deletion | G45D | No mutation | No mutation | No mutation | 12,039 | 1407 | 908 | 110 | |
| 55 (2016) | 0.064 | 4 | YES | A deletion | No mutation | No mutation | No mutation | A→G, alleles 1, and 4 | 10,899 | 3287 | 1042 | 110 | |
| 60 (2016) | 0.064 | 1 | YES | A deletion | G45D | No mutation | No mutation | No mutation | NF | NF8 | 2742 | 21 | |
| 71 (2016) | 0.064 | 1 | YES | A deletion | G45D | G70D | No mutation | No mutation | NF | 10,394 | 609 | 75 | |
| 80 (2016) | 0.064 | 1 | YES | A deletion | No mutation | T69I,G70S | No mutation | No mutation | 7367 | NF10 | 3723 | 777 | |
| 93 (2017) | 0.064 | >256 | YES | A deletion | No mutation | No mutation | No mutation | A→G, alleles 1, 2, 3, and 4 | 10,899 | 1866 | 581 | 33 | |
| 96 (2017) | 0.064 | 1 | YES | A deletion | No mutation | No mutation | No mutation | No mutation | 8123 | 14,586 | 1135 | 566 | |
| 102 (2017) | 0.125 | 1 | YES | A deletion | No mutation | G72D | No mutation | No mutation | 11,173 | 12,746 | 184 | 33 | |
| 105 (2017) | 0.064 | 1 | YES | A deletion | No mutation | No mutation | No mutation | No mutation | 1901 | 1407 | 908 | 110 | |
| 109 (2017) | 0.064 | 1 | YES | A deletion | No mutation | No mutation | No mutation | No mutation | NF | NF15 | 809 | 520 | |
| AZM-S (n=13) | 4 (2014) | 0.064 | 0.25 | YES | A deletion | No mutation | No mutation | No mutation | No mutation | NT | 1731 | 4 | 186 |
| 6 (2014) | 0.064 | 0.25 | NO | A deletion | No mutation | No mutation | No mutation | No mutation | NT | 5061 | 2978 | 1058 | |
| 12 (2014) | 0.064 | 0.125 | YES | A deletion | No mutation | No mutation | No mutation | No mutation | NT | 1766 | 1132 | 33 | |
| 18 (2014) | 0.064 | 0.064 | NO | A deletion | G45D | No mutation | No mutation | No mutation | NT | 2318 | 1053 | 4 | |
| 25 (2015) | 0.064 | 0.125 | NO | A deletion | No mutation | No mutation | No mutation | No mutation | NT | 4007 | 833 | 186 | |
| 34 (2015) | 0.064 | 0.064 | NO | A deletion | No mutation | No mutation | No mutation | No mutation | NT | 6312 | 3723 | 1036 | |
| 39 (2015) | 0.064 | 0.25 | NO | A deletion | No mutation | No mutation | No mutation | No mutation | NT | 13,717 | 7909 | 156 | |
| 72 (2016) | 0.064 | 0.125 | YES | No mutation | No mutation | No mutation | No mutation | No mutation | NT | 14,781 | 6993 | 907 | |
| 83 (2016) | 0.064 | 0.25 | YES | No mutation | No mutation | No mutation | No mutation | No mutation | NT | NF11 | 3531 | 1482 | |
| 88 (2017) | 0.064 | 0.064 | NO | No mutation | No mutation | No mutation | No mutation | No mutation | NT | 1407 | 908 | 110 | |
| 90 (2017) | 0.064 | 0.064 | NO | No mutation | G45D | No mutation | No mutation | No mutation | NT | 12,660 | 1448 | 752 | |
| 100 (2017) | 0.064 | 0.25 | NO | No mutation | G45D | No mutation | No mutation | No mutation | NT | 2286 | 1132 | 75 | |
| 107 (2017) | 0.064 | 0.064 | YES | A deletion | No mutation | No mutation | No mutation | No mutation | NT | 14,781 | 6993 | 907 | |
| Pg | 0.002 | 0.039 | 1 |
Notes: aMultidrug resistant strain: strains resistant to three or more classes of antimicrobial agents. bThe mtr promoter mutation is the single-base-pair (A) deletion in the 13-bp inverted repeat in the promoter region. cGenBank accession number: Z25797.1. dGenBank accession number: YP-208871.1. eGenBank accession number: YP-208867.1. fGenBank accession number: X67293.1. gFisher test result.
Abbreviations: CRO, ceftriaxone; AZM, azithromycin; NF, new found; NT, not test.
Figure 1Phylogenetic tree constructed using MEGA7.0 for NG-MAST STs of 55 N. gonorrhoeae isolates from Wenzhou, China, 2014 to 2017.