Literature DB >> 31692931

A Study in Nucleated Polymerization Models of Protein Aggregation.

Jason K Davis1, Suzanne S Sindi1.   

Abstract

The nucleated polymerization model is a mathematical framework that has been applied to aggregation and fragmentation processes in both the discrete and continuous setting. In particular, this model has been the canonical framework for analyzing the dynamics of protein aggregates arising in prion and amyloid diseases such as as Alzheimer's and Parkinson's disease. We present an explicit steady-state solution to the aggregate size distribution governed by the discrete nucleated polymerization equations. Steady-state solutions have been previously obtained under the assumption of continuous aggregate sizes; however, the discrete solution allows for direct computation and parameter inference, as well as facilitates estimates on the accuracy of the continuous approximation.

Entities:  

Keywords:  difference equation; generating function; nucleated polymerization; prions; protein aggregates

Year:  2014        PMID: 31692931      PMCID: PMC6830736          DOI: 10.1016/j.aml.2014.09.007

Source DB:  PubMed          Journal:  Appl Math Lett        ISSN: 0893-9659            Impact factor:   4.055


  12 in total

1.  Kinetics of prion growth.

Authors:  Thorsten Pöschel; Nikolai V Brilliantov; Cornelius Frömmel
Journal:  Biophys J       Date:  2003-12       Impact factor: 4.033

2.  The physical basis of how prion conformations determine strain phenotypes.

Authors:  Motomasa Tanaka; Sean R Collins; Brandon H Toyama; Jonathan S Weissman
Journal:  Nature       Date:  2006-06-28       Impact factor: 49.962

3.  A mathematical analysis of the dynamics of prion proliferation.

Authors:  Meredith L Greer; Laurent Pujo-Menjouet; Glenn F Webb
Journal:  J Theor Biol       Date:  2006-04-28       Impact factor: 2.691

Review 4.  Protein aggregation kinetics, mechanism, and curve-fitting: a review of the literature.

Authors:  Aimee M Morris; Murielle A Watzky; Richard G Finke
Journal:  Biochim Biophys Acta       Date:  2008-11-11

5.  Self-replication and scrapie.

Authors:  J S Griffith
Journal:  Nature       Date:  1967-09-02       Impact factor: 49.962

6.  Quantifying the kinetic parameters of prion replication.

Authors:  J Masel; V A Jansen; M A Nowak
Journal:  Biophys Chem       Date:  1999-03-29       Impact factor: 2.352

Review 7.  Prion diseases of humans and animals: their causes and molecular basis.

Authors:  J Collinge
Journal:  Annu Rev Neurosci       Date:  2001       Impact factor: 12.449

8.  Computational modeling of the relationship between amyloid and disease.

Authors:  Damien Hall; Herman Edskes
Journal:  Biophys Rev       Date:  2012-09

Review 9.  Prions: protein aggregation and infectious diseases.

Authors:  Adriano Aguzzi; Anna Maria Calella
Journal:  Physiol Rev       Date:  2009-10       Impact factor: 37.312

Review 10.  Prion dynamics and the quest for the genetic determinant in protein-only inheritance.

Authors:  Suzanne S Sindi; Tricia R Serio
Journal:  Curr Opin Microbiol       Date:  2009-10-26       Impact factor: 7.934

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  3 in total

Review 1.  Protein Aggregation Landscape in Neurodegenerative Diseases: Clinical Relevance and Future Applications.

Authors:  Niccolò Candelise; Silvia Scaricamazza; Illari Salvatori; Alberto Ferri; Cristiana Valle; Valeria Manganelli; Tina Garofalo; Maurizio Sorice; Roberta Misasi
Journal:  Int J Mol Sci       Date:  2021-06-02       Impact factor: 5.923

2.  Generalizing a mathematical model of prion aggregation allows strain coexistence and co-stability by including a novel misfolded species.

Authors:  Paul Lemarre; Laurent Pujo-Menjouet; Suzanne S Sindi
Journal:  J Math Biol       Date:  2018-08-16       Impact factor: 2.259

3.  A mathematical model of the dynamics of prion aggregates with chaperone-mediated fragmentation.

Authors:  Jason K Davis; Suzanne S Sindi
Journal:  J Math Biol       Date:  2015-08-22       Impact factor: 2.259

  3 in total

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