Literature DB >> 31691022

Complete Genome Sequence of Strain YCSC6, a Marine Bacterium Isolated from Saturated Saltpan with Activity Against Uronema marinum.

Guang Xun Du1,2, Ling Yun Qu3,4, Kun Shang2,5, Ping Gao2, De Wen Ding1,2, Cheng Jun Sun2.   

Abstract

Salinivibrio proteolyticus strain YCSC6 was isolated from a saturated saltpan and demonstrated to have strong insecticidal activity against turbot's pathogenic ciliate-Uronema marinum. In this study, we sequenced its complete genome. Results showed that it consists of two circular chromosomes: 2.49 Mbps and 0.74 Mbps, respectively. It encodes 3429 protein-coding sequences. Biosynthetic gene clusters predicted to synthesize bacteriocins and antimicrobial peptides were discovered, which might be the key factors to lyse and kill U. marinum. The complete genome sequence of strain YCSC6 provides insights into the fundamental genetic potential for elucidating its insecticidal mechanism against U. marinum.

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Year:  2019        PMID: 31691022     DOI: 10.1007/s00284-019-01796-4

Source DB:  PubMed          Journal:  Curr Microbiol        ISSN: 0343-8651            Impact factor:   2.188


  31 in total

1.  IslandPath: aiding detection of genomic islands in prokaryotes.

Authors:  William Hsiao; Ivan Wan; Steven J Jones; Fiona S L Brinkman
Journal:  Bioinformatics       Date:  2003-02-12       Impact factor: 6.937

2.  Production of an extracellular alkaline metalloprotease from a newly isolated, moderately halophile, Salinivibrio sp. strain AF-2004.

Authors:  Mohammad Ali Amoozegar; Azadeh Zahra Fatemi; Hamid Reza Karbalaei-Heidari; Mohamad Reza Razavi
Journal:  Microbiol Res       Date:  2006-04-25       Impact factor: 5.415

Review 3.  Bacteriocins: developing innate immunity for food.

Authors:  Paul D Cotter; Colin Hill; R Paul Ross
Journal:  Nat Rev Microbiol       Date:  2005-10       Impact factor: 60.633

4.  Circos: an information aesthetic for comparative genomics.

Authors:  Martin Krzywinski; Jacqueline Schein; Inanç Birol; Joseph Connors; Randy Gascoyne; Doug Horsman; Steven J Jones; Marco A Marra
Journal:  Genome Res       Date:  2009-06-18       Impact factor: 9.043

5.  Analysis of 16S rRNA gene sequences of Vibrio costicola strains: description of Salinivibrio costicola gen. nov., comb. nov.

Authors:  E Mellado; E R Moore; J J Nieto; A Ventosa
Journal:  Int J Syst Bacteriol       Date:  1996-07

6.  Mapping the targeted membrane pore formation mechanism by solution NMR: the nisin Z and lipid II interaction in SDS micelles.

Authors:  Shang-Te Hsu; Eefjan Breukink; Ben de Kruijff; Robert Kaptein; Alexandre M J J Bonvin; Nico A J van Nuland
Journal:  Biochemistry       Date:  2002-06-18       Impact factor: 3.162

7.  Salinivibrio kushneri sp. nov., a moderately halophilic bacterium isolated from salterns.

Authors:  Clara López-Hermoso; Rafael R de la Haba; Cristina Sánchez-Porro; Antonio Ventosa
Journal:  Syst Appl Microbiol       Date:  2017-12-21       Impact factor: 4.022

8.  antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences.

Authors:  Marnix H Medema; Kai Blin; Peter Cimermancic; Victor de Jager; Piotr Zakrzewski; Michael A Fischbach; Tilmann Weber; Eriko Takano; Rainer Breitling
Journal:  Nucleic Acids Res       Date:  2011-06-14       Impact factor: 16.971

9.  Cytogenomic identification and long-read single molecule real-time (SMRT) sequencing of a Bardet-Biedl Syndrome 9 (BBS9) deletion.

Authors:  Jennifer Reiner; Laura Pisani; Wanqiong Qiao; Ram Singh; Yao Yang; Lisong Shi; Wahab A Khan; Robert Sebra; Ninette Cohen; Arvind Babu; Lisa Edelmann; Ethylin Wang Jabs; Stuart A Scott
Journal:  NPJ Genom Med       Date:  2018-01-22       Impact factor: 8.617

10.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

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