Literature DB >> 31687819

IR Spectra of Crystalline Nucleobases: Combination of Periodic Harmonic Calculations with Anharmonic Corrections Based on Finite Models.

Krzysztof B Beć1,2, Justyna Grabska1, Mirosław A Czarnecki2, Christian W Huck1, Marek J Wójcik3, Takahito Nakajima4, Yukihiro Ozaki5.   

Abstract

This work reports a theoretical study of infrared (IR) spectra of four nucleobases (adenine, cytosine, guanine, and thymine) in the crystalline state. The effects responsible for the fine spectral features were revealed, and the nonfundamental bands significantly contributing to the IR fingerprint region were successfully reproduced. Additionally, we compared the fundamental bands simulated for periodic models in harmonic approximation with the results obtained for finite models in anharmonic approximation. On this basis, we concluded that accurate description of the chemical neighborhood is more essential for the IR fingerprint region than the anharmonicity. Comparison with previous results indicates that the vibrational properties and the nature of intermolecular interactions of nucleobases in the crystalline state remain similar to those in solution. Therefore, the conclusions obtained for well-defined crystalline structures of nucleobases are general and helpful in understanding the vibrational spectra and properties of nucleobases and their derivatives. Finally, this work evidences that anharmonic force field based on finite models may be applied as an inexpensive correction to the harmonic spectrum of an infinite periodic system.

Entities:  

Year:  2019        PMID: 31687819     DOI: 10.1021/acs.jpcb.9b06285

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  3 in total

Review 1.  Near-Infrared Spectroscopy in Bio-Applications.

Authors:  Krzysztof B Beć; Justyna Grabska; Christian W Huck
Journal:  Molecules       Date:  2020-06-26       Impact factor: 4.411

Review 2.  Molecular Spectroscopic Markers of DNA Damage.

Authors:  Kamila Sofińska; Natalia Wilkosz; Marek Szymoński; Ewelina Lipiec
Journal:  Molecules       Date:  2020-01-28       Impact factor: 4.411

3.  Vibrational Dynamics of Crystalline 4-Phenylbenzaldehyde from INS Spectra and Periodic DFT Calculations.

Authors:  Mariela M Nolasco; Catarina F Araujo; Pedro D Vaz; Ana M Amado; Paulo Ribeiro-Claro
Journal:  Molecules       Date:  2020-03-18       Impact factor: 4.411

  3 in total

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