| Literature DB >> 31682593 |
Xi Chen1, Wenjing Wang2, Yanyan Wang1, Xiao Han1, Lei Gao3.
Abstract
BACKGROUND Obesity has become a global public health problem. Obesity increases the risk of several lethal diseases. This study aimed to assess whether the obesity susceptibility was associated with genetic variation in vitamin D receptor (VDR) gene by conducting a meta-analysis. MATERIAL AND METHODS PubMed, EMBASE and Cochrane Library databases were screened for all relevant articles published up to October 2018. The pooled odds ratios (OR) were calculated using STATA 13.0 software for 4 polymorphisms in the VDR gene (ApaI, BsmI, FokI and TaqI). RESULTS Seven case-control studies, including 1188 obese patients and 1657 healthy controls, were recruited. The pooled findings showed that there were no associations between obesity risk and the VDR polymorphisms in ApaI, BsmI and TaqI loci overall. However, VDR TaqI polymorphism was associated with the risk of obesity in Asian under homozygous [TT versus tt: odds ratio (OR)=0.26, 95% confidence interval (CI)=0.14-0.49; P<0.001], heterozygous (Tt versus tt: OR=0.34, 95% CI=0.18-0.64; P=0.001), and dominant (TT+Tt versus tt: OR=0.30, 95% CI=0.17-0.52; P<0.001) models; FokI variant was related with increased risk of obesity only under dominant model (FF+Ff versus ff: OR=1.54, 95% CI=1.15-2.06; P=0.004). CONCLUSIONS Our meta-analysis results suggest that the T allele of TaqI may have a protective effect, while the F allele of FokI is proposed as a risk factor related to obesity.Entities:
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Year: 2019 PMID: 31682593 PMCID: PMC6854884 DOI: 10.12659/MSM.915678
Source DB: PubMed Journal: Med Sci Monit ISSN: 1234-1010
Figure 1Flow diagram of study identification.
Study characteristics of each article included in the meta-analysis.
| First author | Year | Country | Sample size (case/control) | Population | Genotype method | Control source | Gene polymorphism | HWE | NOS |
|---|---|---|---|---|---|---|---|---|---|
| Al-Hazmi et al. [ | 2017 | Saudi Arabia | 100/200 | Adult | PCR-RFLP | Unclear | ApaI, TaqI, BsmI | Yes | 7 |
| Bagheri et al. [ | 2017 | Iran | 38/27 | Adult | Direct sequencing | PB | BsmI | Yes | 7 |
| Bienertová-Vašků et al. [ | 2017 | Czech | 511/371 | Adult | PCR-RFLP | PB | BsmI, ApaI, TaqI, FokI | Yes | 6 |
| Rahmadhani et al. [ | 2017 | Malaysia | 183/535 | Juveniles | Massarray | PB | BsmI | Yes | 6 |
| Yiannis et al. [ | 2016 | Greece | 82/102 | Adult | PCR-RFLP | PB | TaqI | Yes | 6 |
| Fan et al. [ | 2015 | China | 245/284 | Adult | PCR-RFLP | PB | ApaI, TaqI, FokI | Partial | 6 |
| Speer et al. [ | 2001 | Hungary | 29/138 | Adult | PCR-RFLP | HB | BsmI | Yes | 7 |
HB – hospital-based; PB – population-based; HWE – Hardy-Weinberg equilibrium; PCR-RFLP – polymerase chain reaction-restriction fragment length polymorphism; NOS – Newcastle-Ottawa Scale.
Overall meta-analysis of polymorphisms in vitamin D receptor gene.
| SNP | Comparison | Qualified studies | Test of association | Test of heterogeneity | Egger’s or Begger’s test | |||
|---|---|---|---|---|---|---|---|---|
| OR (95% CI) | Model | |||||||
| ApaI | A | 3 | 1.02 (0.88–1.19) | 0.770 | F | 0.193 | 39.2 | 0.256 |
| AA | 1.09 (0.81–1.47) | 0.568 | F | 0.341 | 7.1 | 0.243 | ||
| AA | 1.10 (0.85–1.43) | 0.482 | F | 0.953 | 0.0 | 0.749 | ||
| Aa | 0.95 (0.74–1.21) | 0.681 | F | 0.244 | 29.0 | 0.622 | ||
| AA+Aa | 0.98 (0.78–1.23) | 0.840 | F | 0.168 | 44.0 | 0.268 | ||
| AA | 1.25 (0.632–2.48) | 0.519 | R | 0.001 | 86.3 | 0.599 | ||
| BsmI | B | 5 | 0.93 (0.67–1.28) | 0.644 | R | 0.004 | 73.7 | 0.483 |
| BB | 0.90 (0.45–1.78) | 0.755 | R | 0.010 | 70.0 | 0.173 | ||
| BB | 1.02 (0.77–1.36) | 0.894 | F | 0.168 | 37.9 | 0.083 | ||
| Bb | 0.94 (0.76–1.17) | 0.572 | F | 0.102 | 48.2 | 0.818 | ||
| BB+Bb | 0.82 (0.53–1.28) | 0.387 | R | 0.018 | 66.5 | 0.626 | ||
| BB | 1.05 (0.64–1.71) | 0.857 | R | 0.034 | 61.5 | 0.138 | ||
| FokI | F | 2 | 1.05 (0.77–1.44) | 0.753 | R | 0.054 | 73.0 | 0.317 |
| FF | 1.21 (0.71–2.06) | 0.493 | R | 0.107 | 61.4 | 0.317 | ||
| FF | 0.92 (0.72–1.18) | 0.515 | F | 0.190 | 41.7 | 0.317 | ||
| Ff | 1.35 (0.99–1.83) | 0.061 | F | 0.511 | 0.0 | 0.317 | ||
| FF+Ff | 1.54 (1.15–2.06) | 0.004 | F | 0.750 | 0.0 | 0.317 | ||
| FF | 0.98 (0.66–1.44) | 0.914 | R | 0.092 | 64.8 | 0.317 | ||
| TaqI | T | 4 | 1.07 (0.55–2.08) | 0.843 | R | 0.000 | 93.2 | 0.362 |
| TT | 0.63 (0.25–1.60) | 0.330 | R | 0.003 | 82.9 | 0.846 | ||
| TT | 1.37 (0.65–2.88) | 0.413 | R | 0.000 | 89.3 | 0.645 | ||
| Tt | 0.62 (0.33–1.17) | 0.138 | R | 0.058 | 64.8 | 0.406 | ||
| TT+Tt | 0.61 (0.29–1.28) | 0.189 | R | 0.011 | 77.8 | 0.583 | ||
| TT | 1.21 (0.53–2.72) | 0.654 | R | 0.000 | 92.0 | 0.751 | ||
OR – odds ratio; CI – confidence interval; R – random-effects; F – fixed-effects. Begger’s test was performed only for FokI.
Subgroup analysis for ApaI polymorphism in vitamin D receptor gene.
| Study | A | AA | Aa | AA+Aa | AA | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| N | OR (95% CI) | OR (95% CI) | OR (95% CI) | OR (95% CI) | OR (95% CI) | ||||||
| Ethnicity | |||||||||||
| Asian | 2 | 0.92 (0.75–1.13) | 0.416 | 0.91 (0.61–1.37) | 0.659 | 0.82 (0.59–1.13) | 0.225 | 0.84 (0.62–1.13) | 0.241 | 0.90 (0.63–1.27) | 0.539 |
| European | 1 | 1.15 (0.93–1.43) | 0.197 | 1.33 (0.86–2.06) | 0.194 | 1.17 (0.80–1.70) | 0.428 | 1.22 (0.85–1.74) | 0.276 | 2.31 (1.65–3.23) | 0.000 |
| Population | |||||||||||
| Adult | 3 | 1.02 (0.88–1.19) | 0.770 | 1.09 (0.81–1.47) | 0.568 | 0.95 (0.74–1.21) | 0.681 | 0.98 (0.78–1.23) | 0.840 | 1.25 (0.63–2.48) | 0.519 |
| Juveniles | 0 | ||||||||||
| Sample size | |||||||||||
| ≤100 | 1 | 1.06 (0.75–1.50) | 0.725 | 1.12 (0.58–2.19) | 0.735 | 1.08 (0.56–2.08) | 0.821 | 1.10 (0.60–2.02) | 0.760 | 0.85 (0.52–1.41) | 0.532 |
| >100 | 2 | 1.01 (0.86–1.19) | 0.875 | 1.08 (0.78–1.51) | 0.639 | 0.93 (0.71–1.21) | 0.593 | 0.96 (0.75–1.23) | 0.730 | 1.50 (0.62–3.61) | 0.367 |
| Genotyping | |||||||||||
| PCR-RFLP | 3 | 1.02 (0.88–1.19) | 0.770 | 1.09 (0.81–1.47) | 0.568 | 0.95 (0.74–1.21) | 0.681 | 0.98 (0.78–1.23) | 0.840 | 1.25 (0.63–2.48) | 0.519 |
| Other | 0 | ||||||||||
| Control | |||||||||||
| PB | 2 | 1.01 (0.86–1.19) | 0.875 | 1.08 (0.78–1.51) | 0.639 | 0.93 (0.71–1.21) | 0.593 | 0.96 (0.75–1.23) | 0.730 | 1.50 (0.62–3.61) | 0.367 |
| Other | 1 | 1.06 (0.75–1.50) | 0.725 | 1.12 (0.58–2.19) | 0.735 | 1.08 (0.56–2.08) | 0.821 | 1.10 (0.60–2.02) | 0.760 | 0.85 (0.52–1.41) | 0.532 |
PB – population-based; OR – odds ratio; CI – confidence interval; PCR-RFLP – polymerase chain reaction-restriction fragment length polymorphism.
Subgroup analysis for BsmI polymorphism in vitamin D receptor gene.
| Study | B | BB | Bb | BB+Bb | BB | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| N | OR (95% CI) | OR (95% CI) | OR (95% CI) | OR (95% CI) | OR (95% CI) | ||||||
| Ethnicity | |||||||||||
| Asian | 3 | 0.78 (0.43–1.42) | 0.422 | 0.63 (0.17–2.27) | 0.478 | 0.89 (0.64–1.23) | 0.477 | 0.56 (0.20–1.55) | 0.264 | 0.90 (0.40–2.02) | 0.797 |
| European | 2 | 1.08 (0.89–1.31) | 0.442 | 1.24 (0.82–1.88) | 0.313 | 0.98 (0.73–1.32) | 0.905 | 1.04 (0.79–1.37) | 0.807 | 1.26 (0.86–1.84) | 0.242 |
| Population | |||||||||||
| Adult | 4 | 0.86 (0.56–1.32) | 0.481 | 0.78 (0.31–1.93) | 0.583 | 0.85 (0.65–1.11) | 0.230 | 0.68 (0.35–1.32) | 0.255 | 0.99 (0.54–1.81) | 0.969 |
| Juveniles | 1 | 1.19 (0.89–1.59) | 0.247 | 1.43 (0.70–2.93) | 0.325 | 1.14 (0.79–1.66) | 0.479 | 1.19 (0.84–1.68) | 0.339 | 1.37 (0.68–2.78) | 0.378 |
| Sample size | |||||||||||
| ≤100 | 3 | 0.79 (0.43–1.44) | 0.436 | 0.65 (0.17–2.52) | 0.531 | 0.56 (0.32–0.97) | 0.037 | 0.54 (0.21–1.41) | 0.209 | 0.95 (0.38–2.35) | 0.909 |
| >100 | 2 | 1.09 (0.92–1.30) | 0.300 | 1.24 (0.84–1.81) | 0.276 | 1.04 (0.82–1.31) | 0.774 | 1.08 (0.86–1.35) | 0.510 | 1.23 (0.86–1.77) | 0.254 |
| Genotyping | |||||||||||
| PCR-RFLP | 2 | 0.75 (0.38–1.49) | 0.414 | 0.56 (0.12–2.58) | 0.453 | 0.88 (0.66–1.17) | 0.364 | 0.59 (0.18–1.89) | 0.376 | 0.78 (0.34–1.81) | 0.563 |
| Other | 3 | 1.15 (0.90–1.47) | 0.258 | 1.41 (0.80–2.48) | 0.237 | 1.03 (0.74–1.44) | 0.855 | 1.01 (0.58–1.74) | 0.976 | 1.47 (0.87–2.48) | 0.148 |
| Control | |||||||||||
| PB | 3 | 0.81 (0.32–2.05) | 0.408 | 1.21 (0.83–1.75) | 0.326 | 0.99 (0.78–1.25) | 0.927 | 1.01 (0.74–1.40) | 0.939 | 1.25 (0.88–1.77) | 0.217 |
| Other | 2 | 1.07 (0.91–1.26) | 0.661 | 0.64 (0.09–4.45) | 0.648 | 0.64 (0.35–1.20) | 0.165 | 0.63 (0.15–2.61) | 0.521 | 0.85 (0.27–2.69) | 0.782 |
PB – population-based; OR – odds ratio; CI – confidence interval; PCR-RFLP – polymerase chain reaction-restriction fragment length polymorphism.polymorphism.
Figure 2Forest plots of the association of VDR TaqI polymorphism and obesity risk under allele model overall and in Asian. Squares indicate odds ratio (OR); horizontal lines indicate 95% confidence intervals (CI); hollow diamond indicates the pooled OR and its 95% CI. (A) T versus t; (B) Tt versus tt; (C) TT+Tt versus tt.
Subgroup analysis for TaqI polymorphism in vitamin D receptor gene.
| Study | T | TT | Tt | TT+Tt | TT | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| N | OR (95% CI) | OR (95% CI) | OR (95% CI) | OR (95% CI) | OR (95% CI) | ||||||
| Ethnicity | |||||||||||
| Asian | 2 | 1.10 (0.19–6.21) | 0.918 | 0.26 (0.14–0.49) | 0.34 (0.18–0.64) | 0.30 (0.17–0.52) | 1.22 (0.21–7.10) | 0.825 | |||
| European | 2 | 1.04 (0.56–1.94) | 0.892 | 0.98 (0.36–2.65) | 0.973 | 0.86 (0.56–1.31) | 0.469 | 0.82 (0.55–1.23) | 0.331 | 1.18 (0.42–3.32) | 0.757 |
| Population | |||||||||||
| Adult | 4 | 1.07 (0.55–2.08) | 0.843 | 0.63 (0.25–1.60) | 0.330 | 0.62 (0.33–1.17) | 0.138 | 0.61 (0.29–1.28) | 0.189 | 1.21 (0.53–2.72) | 0.654 |
| Juveniles | 0 | ||||||||||
| Sample size | |||||||||||
| ≤100 | 2 | 0.81 (0.26–2.57) | 0.725 | 0.66 (0.10–4.36) | 0.665 | 0.50 (0.21–1.18) | 0.113 | 0.56 (0.15–2.09) | 0.388 | 1.00 (0.25–4.07) | 0.997 |
| >100 | 2 | 1.42 (0.43–4.74) | 0.569 | 0.64 (0.39–1.04) | 0.071 | 0.86 (0.53–1.39) | 0.543 | 0.75 (0.48–1.18) | 0.209 | 1.45 (0.36–5.87) | 0.605 |
| Genotyping | |||||||||||
| PCR-RFLP | 4 | 1.07 (0.55–2.08) | 0.843 | 0.63 (0.25–1.60) | 0.330 | 0.62 (0.33–1.17) | 0.138 | 0.61 (0.29–1.28) | 0.189 | 1.21 (0.53–2.72) | 0.654 |
| Other | 0 | ||||||||||
| Control | |||||||||||
| PB | 3 | 1.43 (0.68–3.00) | 0.351 | 0.98 (0.36–2.65) | 0.973 | 0.86 (0.56–1.31) | 0.469 | 0.82 (0.55–1.23) | 0.331 | 1.62 (0.61–4.29) | 0.336 |
| Other | 1 | 0.46 (0.32–0.64) | 0.000 | 0.26 (0.14–0.49) | 0.000 | 0.34 (0.18–0.64) | 0.001 | 0.30 (0.17–0.52) | 0.000 | 0.50 (0.30–0.83) | 0.008 |
PB – population-based; OR – odds ratio; CI – confidence interval; PCR-RFLP – polymerase chain reaction-restriction fragment length polymorphism. Bold indicated the P-values to be significant by meta-analysis of at least 2 studies.
Figure 3Forest plots of the association of FokI polymorphism and obesity risk in the dominant model (FF+Ff versus ff). Squares indicate odds ratio (OR); horizontal lines indicate 95% confidence interval (CI); hollow diamond indicates the pooled OR and its 95% CI.
Figure 4Sensitivity analysis for the assessment of influence of each study (TaqI polymorphism: T versus t). Every hollow round indicates the pooled OR. The broken line is 95% CI. The horizontal axis was ln(OR). OR – odds ratio; CI – confidence interval.