Literature DB >> 31682440

VMD Store-A VMD Plugin to Browse, Discover, and Install VMD Extensions.

Henrique S Fernandes1, Sérgio F Sousa1, Nuno M F S A Cerqueira1.   

Abstract

Herein we present the VMD Store, an open-source VMD plugin that simplifies the way that users browse, discover, install, update, and uninstall extensions for the Visual Molecular Dynamics (VMD) software. The VMD Store obtains data about all the indexed VMD extensions hosted on GitHub and presents a one-click mechanism to install and configure VMD extensions. This plugin arises in an attempt to aggregate all VMD extensions into a single platform. The VMD Store is available, free of charge, for Windows, macOS, and Linux at https://biosim.pt/software/ and requires VMD 1.9.3 (or later).

Mesh：

Year:  2019        PMID： 31682440     DOI： 10.1021/acs.jcim.9b00739

Source DB:  PubMed          Journal:  J Chem Inf Model        ISSN： 1549-9596            Impact factor:   4.956


  6 in total

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3.  Integrating Conformational Dynamics and Perturbation-Based Network Modeling for Mutational Profiling of Binding and Allostery in the SARS-CoV-2 Spike Variant Complexes with Antibodies: Balancing Local and Global Determinants of Mutational Escape Mechanisms.

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Journal:  Biomolecules       Date:  2022-07-10

4.  Cryo-EM Structure and Activator Screening of Human Tryptophan Hydroxylase 2.

Authors:  Kongfu Zhu; Chao Liu; Yuanzhu Gao; Jianping Lu; Daping Wang; Huawei Zhang
Journal:  Front Pharmacol       Date:  2022-08-15       Impact factor: 5.988

5.  Probing Mechanisms of Binding and Allostery in the SARS-CoV-2 Spike Omicron Variant Complexes with the Host Receptor: Revealing Functional Roles of the Binding Hotspots in Mediating Epistatic Effects and Communication with Allosteric Pockets.

Authors:  Gennady Verkhivker; Steve Agajanian; Ryan Kassab; Keerthi Krishnan
Journal:  Int J Mol Sci       Date:  2022-09-29       Impact factor: 6.208

6.  New insights into the catalytic mechanism of the SARS-CoV-2 main protease: an ONIOM QM/MM approach.

Authors:  Henrique S Fernandes; Sérgio F Sousa; Nuno M F S A Cerqueira
Journal:  Mol Divers       Date:  2021-06-24       Impact factor: 3.364
  6 in total

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