Literature DB >> 31679987

The 3D Genome as a Target for Anticancer Therapy.

Omar L Kantidze1, Katerina V Gurova2, Vasily M Studitsky3, Sergey V Razin4.   

Abstract

The role of 3D genome organization in the precise regulation of gene expression is well established. Accordingly, the mechanistic connections between 3D genome alterations and disease development are becoming increasingly apparent. This opinion article provides a snapshot of our current understanding of the 3D genome alterations associated with cancers. We discuss potential connections of the 3D genome and cancer transcriptional addiction phenomenon as well as molecular mechanisms of action of 3D genome-disrupting drugs. Finally, we highlight issues and perspectives raised by the discovery of the first pharmaceutical strongly affecting 3D genome organization.
Copyright © 2019 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  3D genome; CTCF; chromatin damage; curaxins; topologically associating domains (TADs); transcriptional addiction

Mesh:

Substances:

Year:  2019        PMID: 31679987     DOI: 10.1016/j.molmed.2019.09.011

Source DB:  PubMed          Journal:  Trends Mol Med        ISSN: 1471-4914            Impact factor:   11.951


  8 in total

1.  Chromatin conformation capture (Hi-C) sequencing of patient-derived xenografts: analysis guidelines.

Authors:  Mikhail G Dozmorov; Katarzyna M Tyc; Nathan C Sheffield; David C Boyd; Amy L Olex; Jason Reed; J Chuck Harrell
Journal:  Gigascience       Date:  2021-04-21       Impact factor: 6.524

2.  Multi-omics mapping of human papillomavirus integration sites illuminates novel cervical cancer target genes.

Authors:  Marissa Iden; Shirng-Wern Tsaih; Yi-Wen Huang; Pengyuan Liu; Meizhu Xiao; Michael J Flister; Janet S Rader
Journal:  Br J Cancer       Date:  2021-09-15       Impact factor: 9.075

3.  3D-GNOME 2.0: a three-dimensional genome modeling engine for predicting structural variation-driven alterations of chromatin spatial structure in the human genome.

Authors:  Michal Wlasnowolski; Michal Sadowski; Tymon Czarnota; Karolina Jodkowska; Przemyslaw Szalaj; Zhonghui Tang; Yijun Ruan; Dariusz Plewczynski
Journal:  Nucleic Acids Res       Date:  2020-07-02       Impact factor: 16.971

4.  Evaluation of chromatin mesoscale organization.

Authors:  Dana Lorber; Talila Volk
Journal:  APL Bioeng       Date:  2022-01-12

5.  Monocytic THP-1 cells diverge significantly from their primary counterparts: a comparative examination of the chromosomal conformations and transcriptomes.

Authors:  Yulong Liu; Hua Li; Daniel M Czajkowsky; Zhifeng Shao
Journal:  Hereditas       Date:  2021-11-05       Impact factor: 3.271

6.  Simultaneous visualization of DNA loci in single cells by combinatorial multi-color iFISH.

Authors:  Ana Mota; Maud Schweitzer; Erik Wernersson; Nicola Crosetto; Magda Bienko
Journal:  Sci Data       Date:  2022-02-10       Impact factor: 6.444

Review 7.  The generation of PD-L1 and PD-L2 in cancer cells: From nuclear chromatin reorganization to extracellular presentation.

Authors:  Zhiwei Fan; Changyue Wu; Miaomiao Chen; Yongying Jiang; Yuanyuan Wu; Renfang Mao; Yihui Fan
Journal:  Acta Pharm Sin B       Date:  2021-09-16       Impact factor: 14.903

Review 8.  3D chromatin architecture and transcription regulation in cancer.

Authors:  Siwei Deng; Yuliang Feng; Siim Pauklin
Journal:  J Hematol Oncol       Date:  2022-05-04       Impact factor: 23.168

  8 in total

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