| Literature DB >> 31677250 |
Yong Li1, Han Xue1, Dan-Ran Bian1, Guantang Xu1, Chungen Piao1.
Abstract
Protein lysine acetylation, a dynamic and reversible posttranslational modification, plays a crucial role in several cellular processes, including cell cycle regulation, metabolism, enzymatic activities, and protein interactions. Brenneria nigrifluens is a pathogen of walnut trees with shallow bark canker and can cause serious disease in walnut trees. Until now, a little has been known about the roles of lysine acetylation in plant pathogenic bacteria. In the present study, the lysine acetylome of B. nigrifluens was determined by high-resolution LC-MS/MS analysis. In total, we identified 1,866 lysine acetylation sites distributed in 737 acetylated proteins. Bioinformatics results indicated that acetylated proteins participate in many different biological functions in B. nigrifluens. Four conserved motifs, namely, LKac , Kac *F, I*Kac , and L*Kac , were identified in this bacterium. Protein interaction network analysis indicated that all kinds of interactions are modulated by protein lysine acetylation. Overall, 12 acetylated proteins were related to the virulence of B. nigrifluens.Entities:
Keywords: zzm321990Brenneria nigrifluenszzm321990; interaction network; lysine acetylome; plant pathogen; virulence
Year: 2019 PMID: 31677250 PMCID: PMC6957402 DOI: 10.1002/mbo3.952
Source DB: PubMed Journal: Microbiologyopen ISSN: 2045-8827 Impact factor: 3.139
Figure 1Identification of lysine acetylation sites in acetylome of Brenneria nigrifluens. (a) The number of lysine acetylation sites in each protein. (b) The number of lysines and acetylated lysines in proteins
Figure 2The distribution of all the identified acetylated proteins categorized by (a) biological process, (b) molecular function, (c) cellular component, (d) subcellular localization
Figure 3Properties of acetylated peptides. (a) Acetylation motifs and conservation of acetylation sites. (b) Number of identified peptides. (c) Heat map of the amino acid compositions around the lysine acetylation sites. (d) The motif scores
Figure 4Distribution of secondary structures containing lysine acetylation sites. Probabilities of lysine acetylation in different protein secondary structures (α‐helix, beta‐strand, and coli). Secondary structure analysis was performed using NetSurfP. Only predictions with a minimum probability of 0.5 for one of the different secondary structures (coil, α‐helix, β‐strand) were considered for analysis
Figure 5Interaction networks of acetylated proteins in Brenneria nigrifluens. (a) Interaction networks of all acetylated proteins. (b) Interaction network of acetylated proteins associated with ribosome. (c) Biosynthesis of secondary metabolites
Acetylated proteins involved in the virulence of Brenneria nigrifluens
| Gene | Position | Pathway | Reference |
|---|---|---|---|
| TolC: outer membrane protein | 342 | Bacterial secretion system | Al‐Karablieh et al., |
| ThrC: threonine synthase | 2,7,203 | Metabolic pathways | Guo et al., |
| FliNY: flagellar motor switch protein FliN/FliY | 82 | Flagellar assembly | Khayi et al., |
| TrpA: tryptophan synthase alpha chain | 9 | Metabolic pathways | Guo et al., |
| PurF: amidophosphoribosyltransferase | 53,114 | Metabolic pathways | Guo et al., |
| PurH: Bifunctional purine biosynthesis protein | 359,380 | Metabolic pathways | Chatterjee, S, |
| GPI: glucose−6‐phosphate isomerase | 28, 35, 80, 65, 140, 228, 234, 238 | Metabolic pathways | Tsuge et al., |
| HtpG: molecular chaperone HtpG | 18 | Plant–pathogen interaction | Bocsanczy et al., |
| Virulence‐related outer membrane protein | 45 | Metabolic pathways | Holtappels et al., |
| GroEL: chaperonin GroEL | 7, 28, 42, 51, 65, 75, 117, 122, 132, 160, 272, 321, 362, 364, 432, 443 | RNA degradation | Chaudhary et al., |
| LeuA: 2‐isopropylmalate synthase | 249 | Metabolic pathways | Lee et al., |
| SerB: phosphoserine phosphatase | 248 | Metabolic pathways | Lee et al., |