Literature DB >> 31671297

Droplet digital PCR quantification of norovirus and adenovirus in decentralized wastewater and graywater collections: Implications for onsite reuse.

Michael A Jahne1, Nichole E Brinkman2, Scott P Keely2, Brian D Zimmerman2, Emily A Wheaton2, Jay L Garland2.   

Abstract

Risk-based treatment of onsite wastewaters for decentralized reuse requires information on the occurrence and density of pathogens in source waters, which differ from municipal wastewater due to scaling and dilution effects in addition to variable source contributions. In this first quantitative report of viral enteric pathogens in onsite-collected graywater and wastewater, untreated graywater (n = 50 samples) and combined wastewater (i.e., including blackwater; n = 28) from three decentralized collection systems were analyzed for two norovirus genogroups (GI/GII) and human adenoviruses using droplet digital polymerase chain reaction (ddPCR). Compared to traditional quantitative PCR (qPCR), which had insufficient sensitivity to quantify viruses in graywater, ddPCR allowed quantification of norovirus GII and adenovirus in 4% and 14% of graywater samples, respectively (none quantifiable for norovirus GI). Norovirus GII was routinely quantifiable in combined wastewater by either PCR method (96% of samples), with well-correlated results between the analyses (R2 = 0.96) indicating a density range of 5.2-7.9 log10 genome copies/L. These concentrations are greater than typically reported in centralized municipal wastewater, yet agree well with an epidemiology-based model previously used to develop pathogen log-reduction targets (LRTs) for decentralized non-potable water systems. Results emphasize the unique quality of onsite wastewaters, supporting the previous LRTs and further quantitative microbial risk assessment (QMRA) of decentralized water reuse. Published by Elsevier Ltd.

Entities:  

Keywords:  Digital PCR; Graywater; Norovirus; QMRA; Wastewater; Water reuse

Mesh:

Substances:

Year:  2019        PMID: 31671297      PMCID: PMC7017454          DOI: 10.1016/j.watres.2019.115213

Source DB:  PubMed          Journal:  Water Res        ISSN: 0043-1354            Impact factor:   11.236


  28 in total

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Authors:  H JEFFREYS
Journal:  Proc R Soc Lond A Math Phys Sci       Date:  1946

2.  Comparative human health risk analysis of coastal community water and waste service options.

Authors:  Mary E Schoen; Xiaobo Xue; Troy R Hawkins; Nicholas J Ashbolt
Journal:  Environ Sci Technol       Date:  2014-07-23       Impact factor: 9.028

3.  Model-Based Classification for Digital PCR: Your Umbrella for Rain.

Authors:  Bart K M Jacobs; Els Goetghebeur; Jo Vandesompele; Ariane De Ganck; Nele Nijs; Anneleen Beckers; Nina Papazova; Nancy H Roosens; Lieven Clement
Journal:  Anal Chem       Date:  2017-04-07       Impact factor: 6.986

4.  Efficiency and sensitivity of the digital droplet PCR for the quantification of antibiotic resistance genes in soils and organic residues.

Authors:  Laura Cavé; Elisabeth Brothier; Danis Abrouk; Panignimyandé Salomon Bouda; Edmond Hien; Sylvie Nazaret
Journal:  Appl Microbiol Biotechnol       Date:  2016-11-14       Impact factor: 4.813

5.  A probabilistic model of norovirus disease burden associated with greywater irrigation of home-produced lettuce in Melbourne, Australia.

Authors:  S Fiona Barker; Joanne O'Toole; Martha I Sinclair; Karin Leder; Manori Malawaraarachchi; Andrew J Hamilton
Journal:  Water Res       Date:  2012-12-19       Impact factor: 11.236

Review 6.  Methods for primary concentration of viruses from water samples: a review and meta-analysis of recent studies.

Authors:  J L Cashdollar; L Wymer
Journal:  J Appl Microbiol       Date:  2013-02-08       Impact factor: 3.772

7.  Microbial quality assessment of household greywater.

Authors:  Joanne O'Toole; Martha Sinclair; Manori Malawaraarachchi; Andrew Hamilton; S Fiona Barker; Karin Leder
Journal:  Water Res       Date:  2012-05-17       Impact factor: 11.236

8.  High-throughput droplet digital PCR system for absolute quantitation of DNA copy number.

Authors:  Benjamin J Hindson; Kevin D Ness; Donald A Masquelier; Phillip Belgrader; Nicholas J Heredia; Anthony J Makarewicz; Isaac J Bright; Michael Y Lucero; Amy L Hiddessen; Tina C Legler; Tyler K Kitano; Michael R Hodel; Jonathan F Petersen; Paul W Wyatt; Erin R Steenblock; Pallavi H Shah; Luc J Bousse; Camille B Troup; Jeffrey C Mellen; Dean K Wittmann; Nicholas G Erndt; Thomas H Cauley; Ryan T Koehler; Austin P So; Simant Dube; Klint A Rose; Luz Montesclaros; Shenglong Wang; David P Stumbo; Shawn P Hodges; Steven Romine; Fred P Milanovich; Helen E White; John F Regan; George A Karlin-Neumann; Christopher M Hindson; Serge Saxonov; Bill W Colston
Journal:  Anal Chem       Date:  2011-10-28       Impact factor: 6.986

9.  Comparison of droplet digital PCR and seminested real-time PCR for quantification of cell-associated HIV-1 RNA.

Authors:  Maja Kiselinova; Alexander O Pasternak; Ward De Spiegelaere; Dirk Vogelaers; Ben Berkhout; Linos Vandekerckhove
Journal:  PLoS One       Date:  2014-01-21       Impact factor: 3.240

10.  Simulation of enteric pathogen concentrations in locally-collected greywater and wastewater for microbial risk assessments.

Authors:  Michael A Jahne; Mary E Schoen; Jay L Garland; Nicholas J Ashbolt
Journal:  Microb Risk Anal       Date:  2017-04
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2.  Reproducibility and sensitivity of 36 methods to quantify the SARS-CoV-2 genetic signal in raw wastewater: findings from an interlaboratory methods evaluation in the U.S.

Authors:  Brian M Pecson; Emily Darby; Charles N Haas; Yamrot M Amha; Mitchel Bartolo; Richard Danielson; Yeggie Dearborn; George Di Giovanni; Christobel Ferguson; Stephanie Fevig; Erica Gaddis; Donald Gray; George Lukasik; Bonnie Mull; Liana Olivas; Adam Olivieri; Yan Qu
Journal:  Environ Sci (Camb)       Date:  2021-01-20       Impact factor: 4.251

Review 3.  Human- and infrastructure-associated bacteria in greywater.

Authors:  M Nagarkar; S P Keely; N E Brinkman; J L Garland
Journal:  J Appl Microbiol       Date:  2021-06-03       Impact factor: 4.059

Review 4.  Occurrence of various viruses and recent evidence of SARS-CoV-2 in wastewater systems.

Authors:  Waqar Ali; Hua Zhang; Zhenglu Wang; Chuanyu Chang; Asif Javed; Kamran Ali; Wei Du; Nabeel Khan Niazi; Kang Mao; Zhugen Yang
Journal:  J Hazard Mater       Date:  2021-02-19       Impact factor: 14.224

Review 5.  Detection and disinfection of COVID-19 virus in wastewater.

Authors:  Vijay Kumar; Simranjeet Singh; Dhriti Kapoor; Daljeet Singh Dhanjal; Deepika Bhatia; Sadaf Jan; Nasib Singh; Romina Romero; Praveen C Ramamurthy; Joginder Singh
Journal:  Environ Chem Lett       Date:  2021-02-22       Impact factor: 9.027

6.  SARS-CoV-2 monitoring at three sewersheds of different scales and complexity demonstrates distinctive relationships between wastewater measurements and COVID-19 case data.

Authors:  M Nagarkar; S P Keely; M Jahne; E Wheaton; C Hart; B Smith; J Garland; E A Varughese; A Braam; B Wiechman; B Morris; N E Brinkman
Journal:  Sci Total Environ       Date:  2021-11-13       Impact factor: 7.963

7.  Molecular surveillance of tuberculosis-causing mycobacteria in wastewater.

Authors:  Hlengiwe N Mtetwa; Isaac D Amoah; Sheena Kumari; Faizal Bux; Poovendhree Reddy
Journal:  Heliyon       Date:  2022-02-04

Review 8.  Wastewater surveillance for SARS-CoV-2 to support return to campus: Methodological considerations and data interpretation.

Authors:  Vikram Kapoor; Haya Al-Duroobi; Duc C Phan; Rakhee S Palekar; Bobby Blount; Kunal J Rambhia
Journal:  Curr Opin Environ Sci Health       Date:  2022-04-02

9.  Accurate quantification of bacterial abundance in metagenomic DNAs accounting for variable DNA integrity levels.

Authors:  Caterina Manzari; Annarita Oranger; Bruno Fosso; Elisabetta Piancone; Graziano Pesole; Anna Maria D'Erchia
Journal:  Microb Genom       Date:  2020-10

10.  Levels of human Rotaviruses and Noroviruses GII in urban rivers running through the city mirror their infection prevalence in populations.

Authors:  Danyang Shi; Hui Ma; Jing Miao; Weili Liu; Dong Yang; Zhigang Qiu; Zhiqiang Shen; Jing Yin; Zhongwei Yang; Huaran Wang; Haibei Li; Zhengshan Chen; Junwen Li; Min Jin
Journal:  Sci Total Environ       Date:  2020-09-03       Impact factor: 7.963

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