Literature DB >> 31664817

Aptamers as Modular Components of Therapeutic Nucleic Acid Nanotechnology.

Martin Panigaj1,2, M Brittany Johnson3, Weina Ke1, Jessica McMillan1, Ekaterina A Goncharova1,4, Morgan Chandler1, Kirill A Afonin1.   

Abstract

Nucleic acids play a central role in all domains of life, either as genetic blueprints or as regulators of various biochemical pathways. The chemical makeup of ribonucleic acid (RNA) or deoxyribonucleic acid (DNA), generally represented by a sequence of four monomers, also provides precise instructions for folding and higher-order assembly of these biopolymers that, in turn, dictate biological functions. The sequence-based specific 3D structures of nucleic acids led to the development of the directed evolution of oligonucleotides, SELEX (systematic evolution of ligands by exponential enrichment), against a chosen target molecule. Among the variety of functions, selected oligonucleotides named aptamers also allow targeting of cell-specific receptors with antibody-like precision and can deliver functional RNAs without a transfection agent. The advancements in the field of customizable nucleic acid nanoparticles (NANPs) opened avenues for the design of nanoassemblies utilizing aptamers for triggering or blocking cell signaling pathways or using aptamer-receptor combinations to activate therapeutic functionalities. A recent selection of fluorescent aptamers enables real-time tracking of NANP formation and interactions. The aptamers are anticipated to contribute to the future development of technologies, enabling an efficient assembly of functional NANPs in mammalian cells or in vivo. These research topics are of top importance for the field of therapeutic nucleic acid nanotechnology with the promises to scale up mass production of NANPs suitable for biomedical applications, to control the intracellular organization of biological materials to enhance the efficiency of biochemical pathways, and to enhance the therapeutic potential of NANP-based therapeutics while minimizing undesired side effects and toxicities.

Entities:  

Keywords:  NANPs; RNA nanotechnology; SELEX; aptamers; exosomes; immunotherapy; nucleic acid delivery; therapeutic nucleic acids

Mesh:

Substances:

Year:  2019        PMID: 31664817      PMCID: PMC7382785          DOI: 10.1021/acsnano.9b06522

Source DB:  PubMed          Journal:  ACS Nano        ISSN: 1936-0851            Impact factor:   15.881


  204 in total

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Authors:  L Jaeger; E Westhof; N B Leontis
Journal:  Nucleic Acids Res       Date:  2001-01-15       Impact factor: 16.971

2.  A logic-gated nanorobot for targeted transport of molecular payloads.

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Journal:  Science       Date:  2012-02-17       Impact factor: 47.728

3.  Technical and biological issues relevant to cell typing with aptamers.

Authors:  Na Li; Jessica N Ebright; Gwendolyn M Stovall; Xi Chen; Hong Hanh Nguyen; Amrita Singh; Angel Syrett; Andrew D Ellington
Journal:  J Proteome Res       Date:  2009-05       Impact factor: 4.466

Review 4.  Aptamer Oligonucleotides: Novel Potential Therapeutic Agents in Autoimmune Disease.

Authors:  Weibin Li; Xiaopeng Lan
Journal:  Nucleic Acid Ther       Date:  2015-05-20       Impact factor: 5.486

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Authors:  Peixuan Guo
Journal:  Nat Nanotechnol       Date:  2010-11-21       Impact factor: 39.213

6.  Plug-and-play fluorophores extend the spectral properties of Spinach.

Authors:  Wenjiao Song; Rita L Strack; Nina Svensen; Samie R Jaffrey
Journal:  J Am Chem Soc       Date:  2014-01-18       Impact factor: 15.419

Review 7.  Fit for the Eye: Aptamers in Ocular Disorders.

Authors:  Daniel W Drolet; Louis S Green; Larry Gold; Nebojsa Janjic
Journal:  Nucleic Acid Ther       Date:  2016-01-12       Impact factor: 5.486

8.  Broccoli Fluorets: Split Aptamers as a User-Friendly Fluorescent Toolkit for Dynamic RNA Nanotechnology.

Authors:  Morgan Chandler; Tatiana Lyalina; Justin Halman; Lauren Rackley; Lauren Lee; Dylan Dang; Weina Ke; Sameer Sajja; Steven Woods; Shrija Acharya; Elijah Baumgarten; Jonathan Christopher; Emman Elshalia; Gabriel Hrebien; Kinzey Kublank; Saja Saleh; Bailey Stallings; Michael Tafere; Caryn Striplin; Kirill A Afonin
Journal:  Molecules       Date:  2018-12-02       Impact factor: 4.411

Review 9.  The Host RNAs in Retroviral Particles.

Authors:  Alice Telesnitsky; Sandra L Wolin
Journal:  Viruses       Date:  2016-08-19       Impact factor: 5.048

10.  Cancer therapies activate RIG-I-like receptor pathway through endogenous non-coding RNAs.

Authors:  Diana Rose E Ranoa; Akash D Parekh; Sean P Pitroda; Xiaona Huang; Thomas Darga; Anthony C Wong; Lei Huang; Jorge Andrade; Jonathan P Staley; Takashi Satoh; Shizuo Akira; Ralph R Weichselbaum; Nikolai N Khodarev
Journal:  Oncotarget       Date:  2016-05-03
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  24 in total

1.  Use of human peripheral blood mononuclear cells to define immunological properties of nucleic acid nanoparticles.

Authors:  Marina A Dobrovolskaia; Kirill A Afonin
Journal:  Nat Protoc       Date:  2020-10-23       Impact factor: 13.491

2.  Challenges to optimizing RNA nanostructures for large scale production and controlled therapeutic properties.

Authors:  Morgan Chandler; Martin Panigaj; Lewis A Rolband; Kirill A Afonin
Journal:  Nanomedicine (Lond)       Date:  2020-05-26       Impact factor: 5.307

Review 3.  From Small Molecules Toward Whole Cells Detection: Application of Electrochemical Aptasensors in Modern Medical Diagnostics.

Authors:  Robert Ziółkowski; Marta Jarczewska; Łukasz Górski; Elżbieta Malinowska
Journal:  Sensors (Basel)       Date:  2021-01-21       Impact factor: 3.576

4.  Anhydrous Nucleic Acid Nanoparticles for Storage and Handling at Broad Range of Temperatures.

Authors:  Allison N Tran; Morgan Chandler; Justin Halman; Damian Beasock; Adam Fessler; Riley Q McKeough; Phuong Anh Lam; Daniel P Furr; Jian Wang; Edward Cedrone; Marina A Dobrovolskaia; Nikolay V Dokholyan; Susan R Trammell; Kirill A Afonin
Journal:  Small       Date:  2022-02-06       Impact factor: 13.281

5.  Controlled Organization of Inorganic Materials Using Biological Molecules for Activating Therapeutic Functionalities.

Authors:  Morgan Chandler; Brian Minevich; Brandon Roark; Mathias Viard; M Brittany Johnson; Mehedi H Rizvi; Thomas A Deaton; Seraphim Kozlov; Martin Panigaj; Joseph B Tracy; Yaroslava G Yingling; Oleg Gang; Kirill A Afonin
Journal:  ACS Appl Mater Interfaces       Date:  2021-08-17       Impact factor: 10.383

6.  The immunorecognition, subcellular compartmentalization, and physicochemical properties of nucleic acid nanoparticles can be controlled by composition modification.

Authors:  Morgan Brittany Johnson; Justin R Halman; Daniel K Miller; Joseph S Cooper; Emil F Khisamutdinov; Ian Marriott; Kirill A Afonin
Journal:  Nucleic Acids Res       Date:  2020-11-18       Impact factor: 16.971

7.  RLDOCK method for predicting RNA-small molecule binding modes.

Authors:  Yangwei Jiang; Shi-Jie Chen
Journal:  Methods       Date:  2021-02-04       Impact factor: 3.608

Review 8.  Exosomes as natural delivery carriers for programmable therapeutic nucleic acid nanoparticles (NANPs).

Authors:  Weina Ke; Kirill A Afonin
Journal:  Adv Drug Deliv Rev       Date:  2021-06-16       Impact factor: 17.873

9.  2021: an immunotherapy odyssey and the rise of nucleic acid nanotechnology.

Authors:  Martin Panigaj; Marina A Dobrovolskaia; Kirill A Afonin
Journal:  Nanomedicine (Lond)       Date:  2021-06-25       Impact factor: 6.096

10.  Programmable DNA-augmented hydrogels for controlled activation of human lymphocytes.

Authors:  Alexander S Zhovmer; Morgan Chandler; Alexis Manning; Kirill A Afonin; Erdem D Tabdanov
Journal:  Nanomedicine       Date:  2021-07-17       Impact factor: 6.096

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