| Literature DB >> 31652793 |
Aysel Mammadova1, Carine E L Carels2,3, Jie Zhou4, Christian Gilissen5, Maria P A C Helmich6, Zhuan Bian7, Huiqing Zhou8,9, Johannes W Von den Hoff10.
Abstract
Orofacial clefts (OFCs) are the most frequent craniofacial birth defects. An orofacial cleft (OFC) occurs as a result of deviations in palatogenesis. Cell proliferation, differentiation, adhesion, migration and apoptosis are crucial in palatogenesis. We hypothesized that deregulation of these processes in oral keratinocytes contributes to OFC. We performed microarray expression analysis on palatal keratinocytes from OFC and non-OFC individuals. Principal component analysis showed a clear difference in gene expression with 24% and 17% for the first and second component, respectively. In OFC cells, 228 genes were differentially expressed (p < 0.001). Gene ontology analysis showed enrichment of genes involved in β1 integrin-mediated adhesion and migration, as well as in P-cadherin expression. A scratch assay demonstrated reduced migration of OFC keratinocytes (343.6 ± 29.62 μm) vs. non-OFC keratinocytes (503.4 ± 41.81 μm, p < 0.05). Our results indicate that adhesion and migration are deregulated in OFC keratinocytes, which might contribute to OFC pathogenesis.Entities:
Keywords: cell biology; craniofacial anomalies; craniofacial biology/genetics; gene expression; molecular biology
Mesh:
Substances:
Year: 2019 PMID: 31652793 PMCID: PMC6895790 DOI: 10.3390/genes10110836
Source DB: PubMed Journal: Genes (Basel) ISSN: 2073-4425 Impact factor: 4.096
Figure 1PCA analysis of microarray data from orofacial cleft (OFC) and non-OFC cells. The first and second component were responsible for 24% and 17% of the difference respectively.
Gene expression.
| GENE | Non-OFC | OFC | Fold |
| ||
|---|---|---|---|---|---|---|
| mean | SD | mean | SD | |||
|
| 601.2 | 212.2 | 284.8 | 74.2 | 2.111 | 0.0057 |
|
| 289.5 | 59.0 | 156.5 | 45.3 | 1.850 | 0.0059 |
|
| 3192 | 593.3 | 1797 | 234.0 | 1.776 | 0.0006 |
|
| 384.9 | 28.0 | 257.2 | 25.8 | 1.496 | 0.0001 |
|
| 5647 | 476.3 | 3979 | 413.8 | 1.419 | 0.0004 |
|
| 228.8 | 16.6 | 163.6 | 16.5 | 1.398 | 0.0003 |
|
| 696.1 | 29.8 | 500.5 | 68.4 | 1.391 | 0.0007 |
|
| 480.9 | 32.6 | 347.1 | 31.2 | 1.385 | 0.0002 |
|
| 2554 | 106.0 | 1847 | 208.9 | 1.383 | 0.0003 |
|
| 88.24 | 9.1 | 64.72 | 4.5 | 1.363 | 0.0006 |
|
| 5886 | 354.0 | 4324 | 817.0 | 1.361 | 0.0045 |
|
| 827.1 | 72.9 | 613 | 51.2 | 1.349 | 0.0008 |
|
| 126.4 | 10.1 | 95.05 | 9.3 | 1.330 | 0.0009 |
|
| 111.9 | 12.1 | 85.6 | 3.3 | 1.307 | 0.0007 |
|
| 5418 | 215.1 | 4338 | 213.4 | 1.249 | 0.0001 |
|
| 196.8 | 8.5 | 157.7 | 13.4 | 1.248 | 0.0007 |
|
| 419.8 | 42.9 | 342.3 | 11.5 | 1.226 | 0.0026 |
|
| 650.7 | 25.4 | 537.8 | 53.4 | 1.210 | 0.0031 |
|
| 42.61 | 5.1 | 35.71 | 3.4 | 1.193 | 0.0330 |
|
| 1263 | 42.0 | 1066 | 84.2 | 1.185 | 0.0026 |
|
| 101.9 | 31.7 | 98.31 | 44.8 | 1.037 | 0.7275 |
Mean non-OFC and mean OFC represent average relative expression in non-OFC and OFC cells, respectively. *, statistically significant differentially expressed genes validated by RT-qPCR.
Figure 2Expression of adhesion genes in the individual cell lines analysed by qPCR. The expression of CDH3, ITGB1, JAK1, LAMA3, THBS1 and TNC is significantly downregulated in OFC keratinocytes vs. non-OFC keratinocytes (*, p < 0.05).
Figure 3(Immuno) staining of palatal tissue samples. Tissue samples from the palatal mucosa of 3 non-OFC (left) and 4 OFC individuals (right) were sectioned and stained with Heamatoxylin–Eosin (H&E, upper panel) or for 1 integrin (middle row) or P-cadherin (lower row). 1 integrin is mainly expressed in the basal layer of the epithelium and the basal membrane. P-cadherin is mainly expressed in the upper layers of the epithelium. The bars indicate 100 m.
Figure 4Scratch assay with palatal keratinocytes. (A) From left to right: Representative picture of the scratch at time point 0; non-OFC keratinocytes after 16 h; and OFC keratinocytes after 16 h. The boxed areas are enlarged. (B) Measurement of migration. The two perpendicular lines represent the scratches that are measured at 12 locations (short lines). (C) The mean migration was calculated as the mean difference between the original width of the scratch and the width after 16 h and expressed in μm. The mean migrated distance after 16 h is significantly higher in non-OFC keratinocytes vs. OFC keratinocytes (*, p < 0.05).