Literature DB >> 31651197

Identification of DDX58 and CXCL10 as Potential Biomarkers in Acute Respiratory Distress Syndrome.

Yongpeng Xie1, Kexi Liu1, Jiye Luo2, Suxia Liu1, Hui Zheng1, Lijuan Cao1, Xiaomin Li2.   

Abstract

Acute respiratory distress syndrome (ARDS) is a devastating condition of acute inflammatory lung injury and causes high morbidity and mortality. Therefore, investigations on the effective biomarkers will be significant for the understanding of ARDS. In our research, the gene expression profiles of 27 samples from ARDS patients (n = 18) and healthy controls (n = 9) were analyzed and eight gene co-expression modules were identified by constructing weighted gene co-expression network. The correlation analysis of modules with phenotypes showed that genes in the yellow and black modules, which were significantly enriched in the ARDS-related pathways, such as TNF signaling pathway, Toll-like receptor signaling pathway, and NF-kappa B signaling pathway, were associated with the phenotype "time postinfection." Genes DDX58 and CXCL10, which were highly expressed after infection and significantly enriched in ARDS-related pathways, presented high score in protein-protein interaction analysis, indicating that they may be associated with ARDS and providing novel biomarkers for its diagnosis, treatment, and surveillance.

Entities:  

Keywords:  CXCL10; DDX58; acute respiratory distress syndrome; biomarker; weighted gene co-expression network

Year:  2019        PMID: 31651197     DOI: 10.1089/dna.2019.4968

Source DB:  PubMed          Journal:  DNA Cell Biol        ISSN: 1044-5498            Impact factor:   3.311


  5 in total

1.  Host gene expression modulated by Zika virus infection of human-293 cells.

Authors:  Sachi Horibata; Tadahisa Teramoto; Navin Vijayarangan; Skyler Kuhn; Raji Padmanabhan; Sona Vasudevan; Michael Gottesman; Radhakrishnan Padmanabhan
Journal:  Virology       Date:  2020-10-06       Impact factor: 3.616

2.  High Expression of CXCL10/CXCR3 in Ventilator-Induced Lung Injury Caused by High Mechanical Power.

Authors:  Yongpeng Xie; Hui Zheng; Zhifang Mou; Yanli Wang; Xiaomin Li
Journal:  Biomed Res Int       Date:  2022-01-07       Impact factor: 3.411

3.  Integrated Network Pharmacology and Experimental Validation Approach to Investigate the Therapeutic Effects of Capsaicin on Lipopolysaccharide-Induced Acute Lung Injury.

Authors:  Peihui Liu; Jindou Hao; Jie Zhao; Rong Zou; Juan Han; Jia Tian; Wanqu Liu; Hao Wang
Journal:  Mediators Inflamm       Date:  2022-01-30       Impact factor: 4.711

4.  Whole Transcriptomic Analysis of Key Genes and Signaling Pathways in Endogenous ARDS.

Authors:  Yongpeng Xie; Jiye Luo; Wenxia Hu; Chongchong Ye; Panpan Ren; Yanli Wang; Xiaomin Li
Journal:  Dis Markers       Date:  2022-10-04       Impact factor: 3.464

5.  RNA sequencing indicates age-dependent shifts in the cardiac fibroblast transcriptome between fetal, neonatal, and adult developmental ages.

Authors:  Luke R Perreault; Thanh T Le; Madeleine J Oudin; Lauren D Black
Journal:  Physiol Genomics       Date:  2021-07-19       Impact factor: 4.297

  5 in total

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