Literature DB >> 31650686

BlastGUI: A Python-based Cross-platform Local BLAST Visualization Software.

Zongjun Du1, Qing Wu1, Tianzhu Wang1, Defang Chen1, Xiaoli Huang1, Wei Yang2, Wei Luo1.   

Abstract

Many researchers use BLAST+ software to build databases and perform sequence alignments. However, command-line operations are required and this created a barrier for researchers with weak computer skills. Therefore, we designed BlastGUI, a Local BLAST visualization software based on Python programming language, to enable users to build databases and perform sequence filtering and sequence alignment through a graphical user interface. The operation visualization, automatic sequence filtering, and cross-platform utilization significantly facilitate biological data analysis and information mining. Our designed software is freely available under the terms of the GNU GPLv3 at https://github.com/byemaxx/BlastGUI.
© 2019 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Keywords:  Local BLAST; Python; Sequence alignment; Visualization

Mesh:

Year:  2019        PMID: 31650686     DOI: 10.1002/minf.201900120

Source DB:  PubMed          Journal:  Mol Inform        ISSN: 1868-1743            Impact factor:   3.353


  3 in total

1.  NBLAST: a graphical user interface-based two-way BLAST software with a dot plot viewer.

Authors:  Beom-Soon Choi; Seon Kang Choi; Nam-Soo Kim; Ik-Young Choi
Journal:  Genomics Inform       Date:  2022-09-30

Review 2.  In silico Methods for Identification of Potential Therapeutic Targets.

Authors:  Xuting Zhang; Fengxu Wu; Nan Yang; Xiaohui Zhan; Jianbo Liao; Shangkang Mai; Zunnan Huang
Journal:  Interdiscip Sci       Date:  2021-11-26       Impact factor: 3.492

3.  Mining the Wheat Grain Proteome.

Authors:  Delphine Vincent; AnhDuyen Bui; Doris Ram; Vilnis Ezernieks; Frank Bedon; Joe Panozzo; Pankaj Maharjan; Simone Rochfort; Hans Daetwyler; Matthew Hayden
Journal:  Int J Mol Sci       Date:  2022-01-10       Impact factor: 5.923

  3 in total

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