| Literature DB >> 31649505 |
Leslie K Climer1,2, Andrew M Cox1,2, Timothy J Reynolds3, Dwayne D Simmons1,2,3.
Abstract
EF-hand Ca2+-binding protein family members, α- and β-parvalbumins have been studied for decades. Yet, considerable information is lacking distinguishing functional differences between mammalian α-parvalbumin (PVALB) and oncomodulin (OCM), a branded β-parvalbumin. Herein, we provide an overview detailing the current body of work centered around OCM as an EF-Hand Ca2+-binding protein and describe potential mechanisms of OCM function within the inner ear and immune cells. Additionally, we posit that OCM is evolutionarily distinct from PVALB and most other β-parvalbumins. This review summarizes recent studies pertaining to the function of OCM and emphasizes OCM as a parvalbumin possessing a unique cell and tissue distribution, Ca2+ buffering capacity and phylogenetic origin.Entities:
Keywords: EF-hand Ca-binding protein ++; beta parvalbumin; cochlea; hair cell; macrophage; phylogeneticanalysis
Year: 2019 PMID: 31649505 PMCID: PMC6794386 DOI: 10.3389/fnmol.2019.00235
Source DB: PubMed Journal: Front Mol Neurosci ISSN: 1662-5099 Impact factor: 5.639
Figure 1Multiple sequence alignment (MSA) and structural comparison of oncomodulin (OCM) to other parvalbumins. (A) Seven representative parvalbumin protein sequences were aligned using the MUSCLE algorithm via MPI Bioinformatics Toolkit (Edgar, 2004; Zimmermann et al., 2018). The sequences are grouped together by MUSCLE based on their pairwise sequence similarities to generate the final MSA. Thus, the order of the proteins in the MSA reflects how similar the sequences are in terms of structure, evolutionary relationships, and/or function. The final MSA is shown in two color schemes which denote amino acids based on biophysical (clustal) and hydrophobic properties. Biophysical characteristics are organized using a Clustal2 coloring scheme. Yellow = proline; orange = glycine; red = negatively charged; fuchsia = positively charged; green and blue = polar; peach = cysteine. Hydrophobicity color scheme shows hydrophilic residues in blue and hydrophobic residues in red. (B) Secondary structures for four representative parvalbumins were obtained from Uniprot.org. Tertiary structures are colored based on predicted hydrophobic properties and were obtained from the Protein Database—Europe via Uniprot.org. Green spheres in tertiary structures represent Ca2+ ions.
Protein expression of select Ca2+-binding proteins.
| Protein | Gene ID | Tissue Expression | Source |
|---|---|---|---|
| Parvalbumin (PVALB)* | Fast-twitch skeletal muscle | Baron et al. ( | |
| Mature inner hair cells | Bergeron et al. ( | ||
| Inhibitory and glutamatergic neurons in the brain | Baron et al. ( | ||
| Kidney | Baron et al. ( | ||
| Thymus and Lung | Föhr et al. ( | ||
| Heart | Föhr et al. ( | ||
| Oncomodulin (OCM)* | Mature outer hair cells | Sakaguchi et al. ( | |
| Vestibular hair cells | Simmons et al. ( | ||
| Infiltrative-macrophages | Yin et al. ( | ||
| Macrophages (post-injury)–Pancreas | Siawaya et al. ( | ||
| Placenta | MacManus et al. ( | ||
| Parvalbumin (tPvalb)∨ | none∨ | Skeletal muscle, Gill, Heart, Brain, Kidney, Ovary | Lee et al. ( |
| Parvalbumin (PV)† | none† | Brain and Muscle | Schwartz and Kay ( |
| Thymic chicken parvalbumin 3 (CPV3)∧ | OCM∧ | Thymic cortex | Hapak et al. ( |
| Avian thymic hormone (ATH)∧ | none∧ | Thymic cortex | Brewer et al. ( |
| Calbindin (CB-D28k)* | Retinal Neurons | Mojumder et al. ( | |
| Kidney and Intestines | Wood et al. ( | ||
| Brain | McIntosh et al. ( | ||
| Bone | Faucheux et al. ( | ||
| Pancreas | Berdal et al. ( | ||
| Teeth | Sooy et al. ( | ||
| Placenta | Koo et al. ( | ||
| Calretinin (CB-D29k)* | Brain | Jungenitz et al. ( | |
| Ovary | Bertschy et al. ( | ||
| Retinal Neurons | Jeon and Jeon ( |
*Indicates Protein and Gene ID are from Homo sapians (Human), .
Protein Expression of select Ca2+-binding proteins in mouse and rat vestibular hair cells.
| Protein | E17–18 | P0 | P3–4 | P10 | 2–6 weeks | 6–8 months | >10 months* | Reference |
|---|---|---|---|---|---|---|---|---|
| OCM | present | *** | present | present | present | diminishing | absent | Simmons et al. ( |
| PVALB | absent | present | present | *** | *** | *** | *** | Zheng and Gao ( |
| CB-D28k | present | absent | absent | absent | *** | *** | *** | Buckiová and Syka ( |
| CB-D29k | present | present | present | present | absent | *** | *** | Dechesne et al. ( |
| OCM | present | *** | present | *** | *** | *** | absent | Simmons et al. ( |
| PVALB | absent | present | present | *** | *** | *** | *** | Zheng and Gao ( |
| CB-D28k | present | absent | absent | absent | *** | *** | *** | Buckiová and Syka ( |
| CB-D29k | *** | *** | *** | *** | *** | *** | *** | Dechesne et al. ( |
| OCM | present | present | present | *** | present | diminishing | absent | Simmons et al. ( |
| PVALB | absent | present | present | *** | *** | *** | *** | Zheng and Gao ( |
| CB-D28k | present | absent | absent | absent | *** | *** | *** | Buckiová and Syka ( |
| CB-D29k | present | present | present | present | absent | *** | *** | Dechesne et al. ( |
*Data in .
Figure 2Phylogenetic analysis of OCM and PVALB homologs. The evolutionary history was inferred by using the Maximum likelihood (ML) method based on the (Le and Gascuel, 2008) model. The boxes (magenta, black, gray) denote three distinct lineages of parvalbumin proteins. The magenta box indicates the mammalian OCM branch. The gray box indicates the α-parvalbumin branch. The black box indicates the β-parvalbumins from lower vertebrates and OCM from Xenopus subsp. The tree with the highest log likelihood (−4,296.92) is shown. The percentage of trees in which the associated taxa clustered together is shown next to the branches. The tree is drawn to scale, with branch lengths measured in the number of substitutions per site. The analysis involved 51 amino acid sequences. All positions with less than 95% site coverage were eliminated. That is, fewer than 5% alignment gaps, missing data, and ambiguous bases were allowed at any position. There was a total of 109 positions in the final dataset. Evolutionary analyses were conducted in MEGA7 (Kumar et al., 2016). The arrowheads on the branches represent a cluster of sequences that have been compiled and represented by a single node for viewing simplicity. The arrowhead size is proportional to the number of sequences within the cluster.
Protein expression of select Ca2+-binding proteins in rat cochlear inner (IHCs) and outer hair cells (OHCs).
| Protein | Cell type | P0-P5 | P6-P10 | P11-P20 | P21-adult | Reference |
|---|---|---|---|---|---|---|
| OCM | OHC | 0–0.5 ng/μg | 2.0 ng/μg | 2.4 ng/μg | 1.8 ng/μg | Yang et al. ( |
| *** | ~0–250 μM | ~1–1.6 mM | 2–3 mM | Hackney et al. ( | ||
| IHC | none | none | *** | none | Yang et al. ( | |
| *** | <50 μM | 0 μM | 0 μM | Hackney et al. ( | ||
| ∣rule | ||||||
| PVALB | OHC | present | diminishing | *** | none | Yang et al. ( |
| *** | <35 μM | 138 μM | 100–300 μM | Hackney et al. ( | ||
| IHC | present | increasing | *** | abundant | Yang et al. ( | |
| *** | ~80–110 μM | 89 μM | ~150 μM | Hackney et al. ( | ||
| ∣rule | ||||||
| CB-D28k | OHC | *** | *** | *** | *** | Yang et al. ( |
| *** | ~400 μM | 196 μM | 15–230 μM | Hackney et al. ( | ||
| IHC | *** | *** | *** | *** | Yang et al. ( | |
| *** | ~400 μM | 57 μM | 0 μM | Hackney et al. ( | ||
| ∣rule | ||||||
| CB-D29k | OHC | *** | *** | *** | *** | Yang et al. ( |
| *** | <35 μM | 35 μM | ~30–60 μM | Hackney et al. ( | ||
| IHC | *** | *** | *** | *** | Yang et al. ( | |
| *** | ~19 μM | 19 μM | ~50 μM | Hackney et al. ( |
Yang et al. (.
Figure 3OCM expression in cochlear hair cells. OCM is expression is enriched around the basolateral membranes of outer hair cells. (A) Schematic of organ of Corti within the basilar membrane of the cochlea. The cochlea is a bony labyrinth that converts sound into neural impulses. This is achieved via two types of hair cells within the organ of Corti, IHCs and OHCs. IHCs make up a single row, and OHCs make up three consecutive rows. OHCs amplify the vibrations of the basilar membrane by interacting directly with the tectorial membrane through specialized cilia, stereocilia, that are atop both types of hair cells. IHC stereocilia do not directly interact with the tectorial membrane but respond to the vibrations amplified by OHCs and transmit the fluid distortions to the auditory nerve fibers responsible for transmitting sound. (B) A confocal image of OCM labeling (red) and phalloidin staining (green) in a cross-section of the mouse organ of Corti from the basal turn of the cochlea. OCM labeling preferentially localized to the basolateral membrane of OHCs and is not present in IHCs. Scale bar represents 10 μm. Modified from Simmons et al. (2010), permission granted by John Wiley & Sons, Inc., Hoboken, NJ, USA. (C) Schematic representation of OCM immunoreactivity in a cochlear OHC. Afferent terminals are shown in blue, efferent terminals are shown in red.
Figure 4OCM expression in vestibular hair cells. OCM is differentially expressed in striolar vs. peristriolar hair cells. (A) A confocal image taken from a 1-month-old mouse utricle labeled for OCM (red) and phalloidin (green). Scale bar represents 50 μm. (B) A maximum intensity projection of OCM labeling (red) in an adult mouse utricular striola shows OCM labeling throughout the cytoplasm. The cells are predominately flask shaped representing Type I hair cells. Scale bar represents 10 μm. Modified from Simmons et al. (2010), permission granted by John Wiley & Sons, Inc. Phalloidin staining is shown in blue. (C) Schematic representation of Type I and Type II vestibular hair cells. OCM is highly expressed in Type I striolar hair cells and also expressed in some Type II striolar hair cells. In contrast, OCM is not expressed in peristriolar hair cells.
Figure 5Model of OCM function in the cochlea. (A) OCM is preferentially localized to the basolateral membrane of OHCs where proteins involved in electromotility are also localized, like Prestin and Actin. At this location, OCM is readily available to modulate Ca2+ required for electromotility. Major sources of Ca2+ for OHCs are internal stores, such as the endoplasmic reticulum-like membranes termed cisternae that localize in patches along all borders of the cell, the Golgi-like compartment called Hensen bodies, and influx into the cell from the extracellular environment by ACh receptors (AChR). (B) Ocm can potentially regulate OHC function in OHC contraction and relaxation through at least two Ca2+-dependent mechanisms: (1) Modulating Ca2+ transients required for RhoA-dependent Actin polymerization; and (2) Modulating Ca2+ transients required for Ca2+/CaM-dependent Prestin stiffness/rigor. These Ca2+ pathways are essential to OHC elongation (contraction) and shortening (relaxation), and we propose that OCM helps regulate these mechanisms necessary for OHC stiffness and electromotility.
Figure 6Model of OCM in immune cells of retina. (A) Forskolin causes an increase [cAMP]i in retinal ganglion cells (RGCs). Via an unknown mechanism, increased [cAMP]i results in OCM binding to an unidentified receptor. Administration of exogenous cAMP also results in OCM binding to RGCs. (B) Without increased [cAMP]i OCM does not bind to RGCs.