Literature DB >> 31647171

Engineering transketolase to accept both unnatural donor and acceptor substrates and produce α-hydroxyketones.

Haoran Yu1, Roberto Icken Hernández López1, David Steadman2, Daniel Méndez-Sánchez2, Sally Higson2, Armando Cázares-Körner2, Tom D Sheppard2, John M Ward1, Helen C Hailes2, Paul A Dalby1.   

Abstract

A narrow substrate range is a major limitation in exploiting enzymes more widely as catalysts in synthetic organic chemistry. For enzymes using two substrates, the simultaneous optimisation of both substrate specificities is also required for the rapid expansion of accepted substrates. Transketolase (TK) catalyses the reversible transfer of a C2 -ketol unit from a donor substrate to an aldehyde acceptor and suffers the limitation of narrow substrate scope for industrial applications. Herein, TK from Escherichia coli was engineered to accept both pyruvate, as a novel donor substrate, and unnatural acceptor aldehydes, including propanal, pentanal, hexanal and 3-formylbenzoic acid (FBA). Twenty single-mutant variants were first designed and characterised experimentally. Beneficial mutations were then recombined to construct a small library. Screening of this library identified the best variant with a 9.2-fold improvement in the yield towards pyruvate and propionaldehyde, relative to wild-type (WT). Pentanal and hexanal were used as acceptors to determine stereoselectivities of the reactions, which were found to be higher than 98% enantiomeric excess (ee) for the S configuration. Three variants were identified to be active for the reaction between pyruvate and 3-FBA. The best variant was able to convert 47% of substrate into product within 24 h, whereas no conversion was observed for WT. Docking experiments suggested a cooperation between the mutations responsible for donor and acceptor recognition, which would promote the activity towards both the acceptor and donor. The variants obtained have the potential to be used for developing catalytic pathways to a diverse range of high-value products.
© 2019 Federation of European Biochemical Societies.

Entities:  

Keywords:  docking; protein engineering; rational design; transketolase; two substrates specificity

Mesh:

Substances:

Year:  2019        PMID: 31647171     DOI: 10.1111/febs.15108

Source DB:  PubMed          Journal:  FEBS J        ISSN: 1742-464X            Impact factor:   5.542


  5 in total

1.  Antibacterial Target DXP Synthase Catalyzes the Cleavage of d-Xylulose 5-Phosphate: a Study of Ketose Phosphate Binding and Ketol Transfer Reaction.

Authors:  Melanie L Johnston; Eucolona M Bonett; Alicia A DeColli; Caren L Freel Meyers
Journal:  Biochemistry       Date:  2022-08-23       Impact factor: 3.321

2.  Biophysical characterization of the inactivation of E. coli transketolase by aqueous co-solvents.

Authors:  Phattaraporn Morris; Ribia García-Arrazola; Leonardo Rios-Solis; Paul A Dalby
Journal:  Sci Rep       Date:  2021-12-08       Impact factor: 4.379

Review 3.  Engineering of enzymes using non-natural amino acids.

Authors:  Yiwen Li; Paul A Dalby
Journal:  Biosci Rep       Date:  2022-08-31       Impact factor: 3.976

4.  Assessing the Thiamine Diphosphate Dependent Pyruvate Dehydrogenase E1 Subunit for Carboligation Reactions with Aliphatic Ketoacids.

Authors:  Stefan R Marsden; Duncan G G McMillan; Ulf Hanefeld
Journal:  Int J Mol Sci       Date:  2020-11-16       Impact factor: 5.923

5.  Characterisation of a hyperthermophilic transketolase from Thermotoga maritima DSM3109 as a biocatalyst for 7-keto-octuronic acid synthesis.

Authors:  Max Cárdenas-Fernández; Fabiana Subrizi; Dragana Dobrijevic; Helen C Hailes; John M Ward
Journal:  Org Biomol Chem       Date:  2021-07-28       Impact factor: 3.876

  5 in total

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