Literature DB >> 31643042

Functions, mechanisms and regulation of Pumilio/Puf family RNA binding proteins: a comprehensive review.

M J Nishanth1, Bindu Simon2.   

Abstract

The Pumilio (Pum)/Puf family proteins are ubiquitously present across eukaryotes, including yeast, plants and humans. They generally bind to the 3' untranslated regions of single stranded RNA targets in a sequence specific manner and destabilize them, although a few reports suggest their role in stabilizing the target transcripts. The Pum isoforms are implicated in a wide array of biological processes including stem cell maintenance, development, ribosome biogenesis as well as human diseases. Further studies on Pum would be interesting and important to understand their evolutionarily conserved and divergent features across species, which can have potential implications in medicine, plant sciences as well as basic molecular and cell biological studies. A large number of research reports exists, pertaining to various aspects of Pum, in individual experimental systems. This review is a comprehensive summary of the functions, types, mechanism of action as well as the regulation of Pum in various species. Also, the research questions to be addressed in future are discussed.

Entities:  

Keywords:  3′UTR; Post-transcriptional gene regulation; Puf family; Pumilio; RNA binding proteins

Mesh:

Substances:

Year:  2019        PMID: 31643042     DOI: 10.1007/s11033-019-05142-6

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.316


  126 in total

1.  A conserved RNA-binding protein controls germline stem cells in Caenorhabditis elegans.

Authors:  Sarah L Crittenden; David S Bernstein; Jennifer L Bachorik; Beth E Thompson; Maria Gallegos; Andrei G Petcherski; Gary Moulder; Robert Barstead; Marvin Wickens; Judith Kimble
Journal:  Nature       Date:  2002-05-22       Impact factor: 49.962

2.  PUM1 is a biphasic negative regulator of innate immunity genes by suppressing LGP2.

Authors:  Yonghong Liu; Linlin Qu; Yuanyuan Liu; Bernard Roizman; Grace Guoying Zhou
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-31       Impact factor: 11.205

3.  A Pumilio-induced RNA structure switch in p27-3' UTR controls miR-221 and miR-222 accessibility.

Authors:  Martijn Kedde; Marieke van Kouwenhove; Wilbert Zwart; Joachim A F Oude Vrielink; Ran Elkon; Reuven Agami
Journal:  Nat Cell Biol       Date:  2010-09-05       Impact factor: 28.824

4.  Reduced Dormancy5 encodes a protein phosphatase 2C that is required for seed dormancy in Arabidopsis.

Authors:  Yong Xiang; Kazumi Nakabayashi; Jia Ding; Fei He; Leónie Bentsink; Wim J J Soppe
Journal:  Plant Cell       Date:  2014-11-18       Impact factor: 11.277

5.  A 3'UTR pumilio-binding element directs translational activation in olfactory sensory neurons.

Authors:  Julia A Kaye; Natalie C Rose; Brett Goldsworthy; Andrei Goga; Noelle D L'Etoile
Journal:  Neuron       Date:  2009-01-15       Impact factor: 17.173

6.  Binding of pumilio to maternal hunchback mRNA is required for posterior patterning in Drosophila embryos.

Authors:  Y Murata; R P Wharton
Journal:  Cell       Date:  1995-03-10       Impact factor: 41.582

7.  Nanos and pumilio establish embryonic polarity in Drosophila by promoting posterior deadenylation of hunchback mRNA.

Authors:  C Wreden; A C Verrotti; J A Schisa; M E Lieberfarb; S Strickland
Journal:  Development       Date:  1997-08       Impact factor: 6.868

8.  Post-transcriptional regulation of mouse neurogenesis by Pumilio proteins.

Authors:  Meng Zhang; Dong Chen; Jing Xia; Wenqi Han; Xiekui Cui; Nils Neuenkirchen; Gretchen Hermes; Nenad Sestan; Haifan Lin
Journal:  Genes Dev       Date:  2017-08-09       Impact factor: 11.361

9.  Identification and characterization of roles for Puf1 and Puf2 proteins in the yeast response to high calcium.

Authors:  Ofir Haramati; Anastasia Brodov; Idan Yelin; Avigail Atir-Lande; Nitzan Samra; Yoav Arava
Journal:  Sci Rep       Date:  2017-06-08       Impact factor: 4.379

10.  Mef2-mediated transcription of the miR379-410 cluster regulates activity-dependent dendritogenesis by fine-tuning Pumilio2 protein levels.

Authors:  Roberto Fiore; Sharof Khudayberdiev; Mette Christensen; Gabriele Siegel; Steven W Flavell; Tae-Kyung Kim; Michael E Greenberg; Gerhard Schratt
Journal:  EMBO J       Date:  2009-02-05       Impact factor: 11.598

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  12 in total

1.  Anatomy of noncovalent interactions between the nucleobases or ribose and π-containing amino acids in RNA-protein complexes.

Authors:  Katie A Wilson; Ryan W Kung; Simmone D'souza; Stacey D Wetmore
Journal:  Nucleic Acids Res       Date:  2021-02-26       Impact factor: 16.971

2.  PUMILIO competes with AUF1 to control DICER1 RNA levels and miRNA processing.

Authors:  Swetha Rajasekaran; Eshan Khan; Samuel R Ching; Misbah Khan; Jalal K Siddiqui; Daniela F Gradia; Chenyu Lin; Stephanie J Bouley; Dayna L Mercadante; Amity L Manning; André P Gerber; James A Walker; Wayne O Miles
Journal:  Nucleic Acids Res       Date:  2022-06-23       Impact factor: 19.160

3.  Understanding the possible influence of Pumilio RNA binding proteins on terpenoid indole alkaloid biosynthesis in Catharanthus roseus.

Authors:  M J Nishanth; Bindu Simon
Journal:  Physiol Mol Biol Plants       Date:  2022-06-06

Review 4.  Evolution of the Neocortex Through RNA-Binding Proteins and Post-transcriptional Regulation.

Authors:  Iva Salamon; Mladen-Roko Rasin
Journal:  Front Neurosci       Date:  2022-01-10       Impact factor: 4.677

Review 5.  An Unanticipated Modulation of Cyclin-Dependent Kinase Inhibitors: The Role of Long Non-Coding RNAs.

Authors:  Debora Bencivenga; Emanuela Stampone; Angela Vastante; Myassar Barahmeh; Fulvio Della Ragione; Adriana Borriello
Journal:  Cells       Date:  2022-04-14       Impact factor: 7.666

6.  RNA Binding Proteins As Regulators of Oxidative Stress Identified by a Targeted CRISPR-Cas9 Single Guide RNA Library.

Authors:  David J Turner; Martin Turner
Journal:  CRISPR J       Date:  2021-06-04

7.  Evolution-guided mutagenesis of the cytoplasmic incompatibility proteins: Identifying CifA's complex functional repertoire and new essential regions in CifB.

Authors:  J Dylan Shropshire; Mahip Kalra; Seth R Bordenstein
Journal:  PLoS Pathog       Date:  2020-08-19       Impact factor: 6.823

8.  Long-lasting effects of chronic exposure to chemical pollution on the hologenome of the Manila clam.

Authors:  Mariangela Iannello; Marica Mezzelani; Giulia Dalla Rovere; Morgan Smits; Tomaso Patarnello; Claudio Ciofi; Lisa Carraro; Luciano Boffo; Serena Ferraresso; Massimiliano Babbucci; Sandro Mazzariol; Cinzia Centelleghe; Barbara Cardazzo; Claudio Carrer; Maurizio Varagnolo; Alessandro Nardi; Lucia Pittura; Maura Benedetti; Daniele Fattorini; Francesco Regoli; Fabrizio Ghiselli; Stefania Gorbi; Luca Bargelloni; Massimo Milan
Journal:  Evol Appl       Date:  2021-11-27       Impact factor: 5.183

Review 9.  The Role of Pumilio RNA Binding Protein in Plants.

Authors:  Sung Un Huh
Journal:  Biomolecules       Date:  2021-12-09

10.  The RNA-binding protein Puf5 contributes to buffering of mRNA upon chromatin-mediated changes in nascent transcription.

Authors:  David Z Kochan; Julia S P Mawer; Jennifer Massen; Kiril Tishinov; Swati Parekh; Martin Graef; Anne Spang; Peter Tessarz
Journal:  J Cell Sci       Date:  2021-08-05       Impact factor: 5.285

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