| Literature DB >> 31642026 |
Malgorzata Kowalczyk1, Krzysztof Kucia2, Aleksander Owczarek3, Renata Suchanek-Raif4, Wojciech Merk2, Anna Fila-Danilow4, Monika Paul-Samojedny4, Piotr Choreza3, Jan Kowalski4.
Abstract
This study aimed to find the potential association between HSPA1B polymorphisms and risk of paranoid schizophrenia, clinical variables of the disease, and suicidal behavior. A total of 901 unrelated Polish subjects of Caucasian origin (377 schizophrenia patients and 524 controls) were recruited. Four single-nucleotide polymorphisms (SNP) were genotyped using PCR-RFLP (rs539689, rs9281590) and TaqMan assays (rs263979, rs6547452). A strong tendency towards statistical significance (p = 0.051) was observed in rs539689 allele distribution between patients and controls in overall study subjects. After stratification according to gender, we found that rs539689 was significantly associated with schizophrenia in males, but not in females. The minor allele C had a protective effect in males [OR 0.73 (95% CI 0.61-0.88, p < 0.05)]. In addition, two SNPs (rs539689, rs9281590) were significantly associated with PANSS scores. Another important finding was a strong significant association between the HSPA1B rs539689 polymorphism and attempted suicide in schizophrenic patients. The C/C genotype and C allele were protective against suicidal behavior in entire sample (p < 0.001), in males (p < 001), and in females (p < 0.05), although associations were weaker than in males. Our findings support that HSPA1B gene may be involved in susceptibility to schizophrenia and clinical presentation of the disease in a sex-dependent manner, and may play a role in suicidal behavior in the Polish population of schizophrenic patients. Further independent analyses in different populations should be performed to clarify the role of HSPA1B in the pathogenesis of schizophrenia.Entities:
Keywords: Genetic association; HSPA1B; Haplotype; Paranoid schizophrenia; Polymorphism; Suicide
Mesh:
Substances:
Year: 2019 PMID: 31642026 PMCID: PMC7021735 DOI: 10.1007/s12017-019-08575-1
Source DB: PubMed Journal: Neuromolecular Med ISSN: 1535-1084 Impact factor: 3.843
Summary of the PCR–RFLP genotyping method
| SNP/location | Primers | Annealing (°C) | Enzyme: fragments in bp (allele) |
|---|---|---|---|
rs539689 (G/C) Exon | F: 5′-CCTACGCCTTCAACATGAAG-3′ R: 5′-CAAAGTCCTTGAGTCCCAAC-3′ | 56 | |
rs9281590 (AAGTT ins/del) 3′UTR | F: 5′-GTGGATTAGGGGCCTTTGTTCTTTAGT-3′ R: 5′-AGGGAACGAAACACCCTTACAGTATCA-3′ | 57 |
Analysis of genotype and allele distributions for the entire population and stratified by gender
| SNP | Total group | Females | Males | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Patients | Controls | Patients | Controls | Patients | Controls | |||||||
| Genotypes | ||||||||||||
| rs539689 | ||||||||||||
| G/G | 139 (36.9) | 170 (32.4) | 6.00 | 0.20 | 50 (32.7) | 73 (31.2) | 0.49 | 0.78 | 89 (39.7) | 97 (33.5) | 3.84 | 0.15 |
| G/C | 174 (46.1) | 240 (45.8) | 76 (49.7) | 113 (48.3) | 98 (43.8) | 127 (43.8) | ||||||
| C/C | 64 (17.0) | 114 (21.8) | 27 (17.6) | 48 (20.5) | 37 (16.5) | 66 (22.8) | ||||||
| rs9281590 | ||||||||||||
| A1/A1 | 45 (11.9) | 63 (12.0) | 0.19 | 0.91 | 22 (14.4) | 25 (10.7) | 1.55 | 0.46 | 23 (10.3) | 38 (13.1) | 0.97 | 0.62 |
| A1/A2 | 159 (42.2) | 228 (43.5) | 62 (40.5) | 106 (45.3) | 97 (43.3) | 122 (42.1) | ||||||
| A2/A2 | 173 (45.9) | 233 (44.5) | 69 (45.1) | 103 (44.0) | 104 (46.4) | 130 (44.8) | ||||||
| rs2763979 | ||||||||||||
| C/C | 171 (45.4) | 237 (45.2) | 0.03 | 0.98 | 67 (43.8) | 106 (45.3) | 1.09 | 0.58 | 104 (46.4) | 131 (45.2) | 1.21 | 0.55 |
| C/T | 162 (43.0) | 224 (42.8) | 65 (42.5) | 104 (44.4) | 97 (43.3) | 120 (41.4) | ||||||
| T/T | 44 (11.7) | 63 (12.0) | 21 (13.7) | 24 (10.3) | 23 (10.3) | 39 (13.4) | ||||||
| rs6457452 | ||||||||||||
| C/C | 314 (83.3) | 445 (84.9) | – | 0.46 | 122 (79.7) | 198 (84.6) | – | 0.12 | 192 (85.7) | 247 (85.2) | – | 0.08 |
| C/T | 61 (16.2) | 73 (14.0) | 29 (18.9) | 36 (15.4) | 32 (14.3) | 37 (12.8) | ||||||
| T/T | 2 (0.5) | 6 (1.1) | 2 (1.3) | 0 | 0 | 6 (2.0) | ||||||
| Alleles | ||||||||||||
| rs539689 | ||||||||||||
| G | 452 (60.0) | 580 (55.3) | 3.80 | 0.051 | 176 (57.5) | 259 (55.3) | 0.36 | 0.55 | 276 (61.6) | 321 (55.3) | 4.07 | |
| C | 302 (40.0) | 468 (44.7) | 130 (42.5) | 209 (44.7) | 172 (38.4) | 259 (44.7) | ||||||
| rs9281590 | ||||||||||||
| A1 | 249 (33.0) | 354 (33.8) | 0.11 | 0.74 | 106 (34.6) | 156 (33.3) | 0.14 | 0.71 | 143 (31.9) | 198 (34.0) | 0.56 | 0.45 |
| A2 | 505 (67.0) | 694 (66.2) | 200 (65.4) | 312 (66.7) | 305 (68.1) | 382 (66.0) | ||||||
| rs2763979 | ||||||||||||
| C | 504 (66.8) | 698 (66.6) | 0.01 | 0.92 | 199 (65.0) | 316 (67.5) | 0.51 | 0.47 | 305 (68.1) | 382 (66.0) | 0.56 | 0.45 |
| T | 250 (33.2) | 350 (33.4) | 107 (35.0) | 152 (32.5) | 143 (31.9) | 198 (34.0) | ||||||
| rs6457452 | ||||||||||||
| C | 689 (91.4) | 963 (91.9) | 0.15 | 0.70 | 273 (89.2) | 432 (92.3) | 2.18 | 0.14 | 416 (93.0) | 531 (92.0) | 0.59 | 0.44 |
| T | 65 (8.6) | 85 (8.1) | 33 (10.8) | 36 (7.7) | 32 (7.0) | 49 (8.0) | ||||||
N (%); nominal associations are bolded
Haplotype analysis of the four HSPA1B SNPs (rs539689, rs9281590, rs2763979, rs6457452) in patients with paranoid schizophrenia and control subjects
| Haplotype | Total group ( | Females ( | Males ( | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Frequency | OR (95% CI) | Frequency | OR (95% CI) | Frequency | OR (95% CI) | ||||
| G–A2–C–C | 0.3944 | 1.00 | – | 0.3716 | 1.00 | – | 0.4083 | 1.00 | – |
| C–A2–C–C | 0.2656 | 0.89 (0.68–1.17) | 0.40 | 0.2859 | 0.78 (0.51–1.18) | 0.24 | 0.2536 | 1.00 (0.70–1.42) | 0.98 |
| G–A1–T–C | 0.1453 | 1.06 (0.77–1.48) | 0.71 | 0.1475 | 0.96 (0.57–1.63) | 0.89 | 0.1445 | 1.16 (0.76–1.78) | 0.49 |
| C–A1–T–C | 0.1039 | 0.75 (0.53–1.08) | 0.12 | 0.0979 | 0.85 (0.47–1.51) | 0.58 | 0.1073 | 0.71 (0.45–1.11) | 0.14 |
| C–A1–T–T | 0.0484 | 0.84 (0.51–1.38) | 0.50 | 0.0458 | 1.54 (0.69–3.43) | 0.29 | 0.0480 | 0.56 (0.27–1.18) | 0.13 |
| G–A1–T–T | 0.0314 | 1.19 (0.63–2.23) | 0.59 | 0.0394 | 0.95 (0.40–2.25) | 0.91 | 0.0280 | 1.56 (0.62–3.92) | 0.34 |
| Rare | 0.0109 | 0.96 (0.39–2.38) | 0.93 | 0.0117 | 1.52 (0.44–5.27) | 0.51 | 0.0103 | 0.51 (0.12–2.13) | 0.36 |
OR odds ratio, CI confidence interval
Results from the two-way ANOVA (sex, genotype) on Positive and Negative Syndrome Scale (PANSS) and age of onset
| SNPs | Clinical variables | Females | Males | |||||
|---|---|---|---|---|---|---|---|---|
| G/G | G/C | C/C | G/G | G/C | C/C | |||
| rs539689 | PANSS-P | 22.6 ± 5.8 | 20.2 ± 5.4 | 19.3 ± 5.3 | 23.3 ± 6.2 | 20.4 ± 5.9 | 21.8 ± 5.6 | 0.097a/ |
| PANSS-N | 25.2 ± 5.9 | 24.3 ± 6.6 | 23.0 ± 5.7 | 25.9 ± 6.5 | 25.4 ± 6.4 | 23.8 ± 5.0 | 0.209a/ | |
| PANSS-G | 43.8 ± 8.2 | 41.2 ± 8.7 | 40.7 ± 6.3 | 46.8 ± 9.6 | 42.6 ± 8.9 | 42.1 ± 7.9 | 0.097a/ | |
| Total PANSS | 91.8 ± 17.1 | 85.7 ± 17.8 | 83.0 ± 13.2 | 96.0 ± 18.8 | 88.5 ± 17.0 | 87.7 ± 15.8 | ||
| Age of onset | 28.4 ± 8.2 | 27.4 ± 7.2 | 28.3 ± 7.1 | 23.4 ± 5.4 | 24.3 ± 5.9 | 25.3 ± 6.1 | ||
Values represent mean PANSS scores/mean age of onset (years) ± standard deviation
Nominally significant p values are given in bold
PANSS-P positive scale, PANSS-N negative scale, PANSS-G general psychopathology scale
aMain effect of sex
bMain effect of genotype
cSex × genotype interaction
Analysis of different inheritance models for the SNP rs539689 between suicidal attempters (SA) and no-suicidal attempters (NSA) with a paranoid schizophrenia diagnosis
| Model | Genotype | Total group ( | Females ( | Males ( | BIC | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SA/NSA | OR (95% CI) | BIC | SA/NSA | OR (95% CI) | BIC | SA/NSA | OR (95% CI) | ||||||
| Co-dominant | G/G G/C C/C | 43(64.2)/96(31.0) 19(28.4)/155(50.0) 5(7.5)/59(19.0) | 1.00 | 344.9 | 12(52.2)/38(29.2) 10(43.5)/66(50.8) 1(4.3)/26(20.0) | 1.00 0.48 (0.19–1.22) | 137.9 | 31(70.5)/58(32.2) 9(20.4)/89(49.4) 4(9.1)/33(18.4) | 1.00 | 216.8 | |||
| Dominant | G/G G/C–C/C | 43(64.2)/96(31.0) 24(35.8)/214(69.0) | 1.00 | 339.4 | 12(52.2)/38(29.2) 11(47.8)/92(70.8) | 1.00 | 135.2 | 31(70.5)/58(32.2) 13(29.5)/122(67.8) | 1.00 | 211.4 | |||
| Recessive | G/G–G/C C/C | 62(92.5)/251(81.0) 5(7.5)/59(19.0) | 1.00 | 358.5 | 22(95.7)/104(80.0) 1(4.3)/26(20.0) | 1.00 0.18 (0.02–1.41) | 0.08 | 135.3 | 40(90.9)/147(81.6) 4(9.1)/33(18.4) | 1.00 0.45 (0.15–1.33) | 0.12 | 230.3 | |
| Over-dominant | G/G–C/C G/C | 48(71.6)/155(50.0) 19(28.4)/155(50.0) | 1.00 | 353.9 | 13(56.5)/64(49.2) 10(43.5)/66(50.8) | 1.00 0.75 (0.31–1.82) | 0.52 | 139.2 | 35(79.6)/91(50.6) 9(20.4)/89(49.4) | 1.00 | 219.8 | ||
| Log-additive | – | – | 340.6 | – | 133.2 | – | 215.5 | ||||||
Nominally significant p values are given in bold
OR odds ratio, CI confidence interval, BIC Bayesian information criterion